\HeaderA{eset\_estrogen\_comb}{The data from the estrogen package processed using the multi-mgMOS and PUMAcomb algorithms}{eset.Rul.estrogen.Rul.comb}
\keyword{datasets}{eset\_estrogen\_comb}
\begin{Description}\relax
This data is taken from the \pkg{estrogen} package. It was created to be used in the vignette for the \pkg{puma} pacakge. It can be produced using the following code (note this could take a long time to run):

\begin{alltt}
                data(eset\_estrogen\_mmgmos)
                eset\_estrogen\_mmgmos\_normd <- PUMAnormalize(eset\_estrogen\_mmgmos, "median")
                eset\_estrogen\_comb <- PUMAcomb(eset\_estrogen\_mmgmos\_normd)
\end{alltt}
\end{Description}
\begin{Usage}
\begin{verbatim}data(eset_estrogen_comb)\end{verbatim}
\end{Usage}
\begin{Format}\relax
An \code{\LinkA{ExpressionSet}{ExpressionSet}} object containing the expression levels and standard errors from combining the replicates for each combination of levels of factors from 8 HG\_U95Av2 arrays, in a 2 x 2 factorial design, with 2 replicates for each combination of factors. The factors are estrogen (absent of present) and time.h (10 or 48).
\end{Format}
\begin{SeeAlso}\relax
\code{\LinkA{eset\_estrogen\_mmgmos}{eset.Rul.estrogen.Rul.mmgmos}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
data(eset_estrogen_comb)
exprs(eset_estrogen_comb)[1:3,1:3]
assayDataElement(eset_estrogen_comb,"se.exprs")[1:3,1:3]
\end{ExampleCode}
\end{Examples}

