eset_estrogen_rma          package:pumadata          R Documentation

_T_h_e _d_a_t_a _f_r_o_m _t_h_e _e_s_t_r_o_g_e_n _p_a_c_k_a_g_e _p_r_o_c_e_s_s_e_d _u_s_i_n_g _t_h_e _R_M_A _a_l_g_o_r_i_t_h_m

_D_e_s_c_r_i_p_t_i_o_n:

     This data is taken from the 'estrogen' package. It was created to
     be used in the vignette for the 'puma' pacakge. It can be produced
     using the following code:


                     data(affybatch.estrogen)
                     eset_estrogen_mmgmos <- rma(affybatch.estrogen)


_U_s_a_g_e:

     data(eset_estrogen_rma)

_F_o_r_m_a_t:

     An 'ExpressionSet' object containing expression levels for 8
     HG_U95Av2 arrays, in a 2 x 2 factorial design, with 2 replicates
     for each combination of factors. The factors are estrogen (absent
     of present) and time.h (10 or 48).

_S_e_e _A_l_s_o:

     'affybatch.estrogen' 'eset_estrogen_mmgmos'

_E_x_a_m_p_l_e_s:

     data(eset_estrogen_rma)
     show(eset_estrogen_rma)
     exprs(eset_estrogen_rma)[1:3,1:3]
     assayDataElement(eset_estrogen_rma,"se.exprs")[1:3,1:3]

