eset_estrogen_comb {pumadata} | R Documentation

## The data from the estrogen package processed using the multi-mgMOS and PUMAcomb algorithms

### Description

This data is taken from the estrogen package. It was created to be used in the vignette for the puma pacakge. It can be produced using the following code (note this could take a long time to run):

                    data(eset_estrogen_mmgmos)
                    eset_estrogen_mmgmos_normd <- PUMAnormalize(eset_estrogen_mmgmos, "median")
                    eset_estrogen_comb <- PUMAcomb(eset_estrogen_mmgmos_normd)

### Usage

    data(eset_estrogen_comb)

### Format

An `ExpressionSet` object containing the expression levels and standard errors from combining the replicates for each combination of levels of factors from 8 HG_U95Av2 arrays, in a 2 x 2 factorial design, with 2 replicates for each combination of factors. The factors are estrogen (absent of present) and time.h (10 or 48).

### See Also

`eset_estrogen_mmgmos`

### Examples

    data(eset_estrogen_comb)
    exprs(eset_estrogen_comb)[1:3,1:3]
    assayDataElement(eset_estrogen_comb,"se.exprs")[1:3,1:3]

[Package pumadata version 1.0.1 Index]