neveCGHmatch {Neve2006} | R Documentation |
ExpressionSet and cghSet
data(neveCGHmatch) data(neveRMAmatch) data(neveExCGH)
The individual datasets (aCGH and expression assays) take the form of a cghSet for neveCGHmatch and an ExpressionSet for neveRMAmatch. There are only 50 samples because only 50 could be aligned on the given sample name tokens in the caArrayDB data as of June 9 2007. Those sample name tokens are very mangled in the CEL files.
The combined data structure neveExCGH
has a special container class cghExSet
.
links are provided in the pdf of the Cancer Cell paper;
see the PMID of experimentData(neveCGHmatch)
PMID 17157791
data(neveCGHmatch) neveCGHmatch logRatios(neveCGHmatch)[1:4,1:4] data(neveRMAmatch) neveRMAmatch