neveCGHmatch {Neve2006}R Documentation

Neve Cancer Cell 2006 expression plus CGH data

Description

ExpressionSet and cghSet

Usage

data(neveCGHmatch)
data(neveRMAmatch)
data(neveExCGH)

Format

The individual datasets (aCGH and expression assays) take the form of a cghSet for neveCGHmatch and an ExpressionSet for neveRMAmatch. There are only 50 samples because only 50 could be aligned on the given sample name tokens in the caArrayDB data as of June 9 2007. Those sample name tokens are very mangled in the CEL files.

The combined data structure neveExCGH has a special container class cghExSet.

Source

links are provided in the pdf of the Cancer Cell paper; see the PMID of experimentData(neveCGHmatch)

References

PMID 17157791

Examples

data(neveCGHmatch)
neveCGHmatch
logRatios(neveCGHmatch)[1:4,1:4]
data(neveRMAmatch)
neveRMAmatch

[Package Neve2006 version 0.1.6 Index]