GE CodeLink Rat Inflammation 16 Bioarray annotation data (chip ri16cod)

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Documentation for package ‘ri16cod.db’ version 2.2.0

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ri16cod Bioconductor annotation data package
ri16codACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
ri16codALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
ri16codCHR Map Manufacturer IDs to Chromosomes
ri16codCHRLENGTHS A named vector for the length of each of the chromosomes
ri16codCHRLOC Map Manufacturer IDs to Chromosomal Location
ri16codCHRLOCEND Map Manufacturer IDs to Chromosomal Location
ri16codENSEMBL Map Ensembl gene acession numbers with Entrez Gene identifiers
ri16codENSEMBL2PROBE Map Ensembl gene acession numbers with Entrez Gene identifiers
ri16codENTREZID Map between Manufacturer Identifiers and Entrez Gene
ri16codENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
ri16codENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
ri16codGENENAME Map between Manufacturer IDs and Genes
ri16codGO Map between Manufacturer IDs and Gene Ontology (GO)
ri16codGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
ri16codGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
ri16codLOCUSID Map between Manufacturer Identifiers and Entrez Gene
ri16codMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
ri16codMAPCOUNTS Number of mapped keys for the maps in package ri16cod.db
ri16codORGANISM The Organism for ri16cod
ri16codPATH Mappings between probe identifiers and KEGG pathway identifiers
ri16codPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
ri16codPFAM Map Manufacturer IDs to Pfam IDs
ri16codPMID Map between Manufacturer Identifiers and PubMed Identifiers
ri16codPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
ri16codPROSITE Map Manufacturer IDs to PROSITE ID
ri16codREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
ri16codSYMBOL Map between Manufacturer Identifiers and Gene Symbols
ri16codUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
ri16codUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
ri16codUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
ri16cod_dbconn Collect information about the package annotation DB
ri16cod_dbfile Collect information about the package annotation DB
ri16cod_dbInfo Collect information about the package annotation DB
ri16cod_dbschema Collect information about the package annotation DB