rae230bPROSITE          package:rae230b.db          R Documentation

_M_a_p _M_a_n_u_f_a_c_t_u_r_e_r _I_D_s _t_o _P_R_O_S_I_T_E _I_D

_D_e_s_c_r_i_p_t_i_o_n:

     rae230bPROSITE is an R object that provides mappings between a
     manufacturer identifier and the associated PROSITE identifiers.

_D_e_t_a_i_l_s:

     Each manufacturer identifier maps to a named vector of PROSITE
     identifiers.  The name for each PROSITE identifier is the IPI
     accession numbe where this PROSITE identifier is found.

     If the PROSITE is a named NA, it means that the associated Entrez
     Gene id of this manufacturer identifier is found in an IPI entry
     of the IPI database, but there is no PROSITE identifier in the
     entry.

     If the PROSITE is a non-named NA, it means that the associated
     Entrez Gene id of this manufacturer identifier is not found in any
     IPI entry of the IPI database.

     Mappings were based on data provided by: The International Protein
     Index ( ftp://ftp.ebi.ac.uk/pub/databases/IPI/current ) on
     2008-Sep02

_R_e_f_e_r_e_n_c_e_s:

     Kersey P. J., Duarte J., Williams A., Karavidopoulou Y., Birney
     E., Apweiler R. The International Protein Index: An integrated
     database for proteomics experiments. Proteomics 4(7): 1985-1988
     (2004) <URL: http://www.ebi.ac.uk/IPI/IPIhelp.html>

_E_x_a_m_p_l_e_s:

                     x <- rae230bPROSITE
             # Get the probe identifiers that are mapped to any PROSITE ID
             mapped_probes <- mappedkeys(x)
             # Convert to a list
             xxx <- as.list(x[mapped_probes])
             # randomly display 10 probes
             xxx[sample(1:length(xxx), 10)]

