gahgu133bINTERPRO {gahgu133b}R Documentation

Map between custom probeset Identifiers and Interpro domains

Description

gahgu133bINTERPRO is an R environment that provides mappings between custom probeset identifiers and Interpro domains of corresponding protein.

Details

Each identifier is mapped to a named vector containing Interpro information about domains names. An NA is reported if there is no Interpro information for a given gene.

Each element name of named vector contains Interpro ID for corresponding domain.

Mappings were based on data provided by:

GeneCards database - www.genecards.org

Package built Mon Aug 25 17:25:49 2008

References

www.genecards.org

Examples

    # Convert the environment to a list
    xx <- as.list(gahgu133bINTERPRO)
    if(length(xx) > 0){
        # The Interpro domains for the first two elements of XX
        xx[1:2]
        # Get the first one
        xx[[1]]
    }

[Package gahgu133b version 1.4.5 Index]