Affymetrix bovine annotation data (chip bovine)


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Documentation for package ‘bovine.db’ version 2.2.5

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bovine Bioconductor annotation data package
bovineACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
bovineALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
bovineCHR Map Manufacturer IDs to Chromosomes
bovineCHRLENGTHS A named vector for the length of each of the chromosomes
bovineCHRLOC Map Manufacturer IDs to Chromosomal Location
bovineCHRLOCEND Map Manufacturer IDs to Chromosomal Location
bovineENTREZID Map between Manufacturer Identifiers and Entrez Gene
bovineENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
bovineENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
bovineGENENAME Map between Manufacturer IDs and Genes
bovineGO Map between Manufacturer IDs and Gene Ontology (GO)
bovineGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
bovineGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
bovineLOCUSID Map between Manufacturer Identifiers and Entrez Gene
bovineMAPCOUNTS Number of mapped keys for the maps in package bovine.db
bovineORGANISM The Organism for bovine
bovinePATH Mappings between probe identifiers and KEGG pathway identifiers
bovinePATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
bovinePFAM Map Manufacturer IDs to Pfam IDs
bovinePMID Map between Manufacturer Identifiers and PubMed Identifiers
bovinePMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
bovinePROSITE Map Manufacturer IDs to PROSITE ID
bovineREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
bovineSYMBOL Map between Manufacturer Identifiers and Gene Symbols
bovineUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
bovineUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
bovineUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
bovine_dbconn Collect information about the package annotation DB
bovine_dbfile Collect information about the package annotation DB
bovine_dbInfo Collect information about the package annotation DB
bovine_dbschema Collect information about the package annotation DB