# SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)

## Documentation for package ‘SHDZ.db’ version 2.2.5

## Help Pages

SHDZ | Bioconductor annotation data package
SHDZACCNUM | Map Manufacturer identifiers to GenBank Accession Numbers
SHDZALIAS2PROBE | Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
SHDZCHR | Map Manufacturer IDs to Chromosomes
SHDZCHRLENGTHS | A named vector for the length of each of the chromosomes
SHDZCHRLOC | Map Manufacturer IDs to Chromosomal Location
SHDZCHRLOCEND | Map Manufacturer IDs to Chromosomal Location
SHDZENSEMBL | Map Ensembl gene accession numbers with Entrez Gene identifiers
SHDZENSEMBL2PROBE | Map Ensembl gene accession numbers with Entrez Gene identifiers
SHDZENTREZID | Map between Manufacturer Identifiers and Entrez Gene
SHDZENZYME | Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
SHDZENZYME2PROBE | Map between Enzyme Commission Numbers and Manufacturer Identifiers
SHDZGENENAME | Map between Manufacturer IDs and Genes
SHDZGO | Map between Manufacturer IDs and Gene Ontology (GO)
SHDZGO2ALLPROBES | Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
SHDZGO2PROBE | Map between Gene Ontology (GO) and Manufacturer Identifiers
SHDZLOCUSID | Map between Manufacturer Identifiers and Entrez Gene
SHDZMAP | Map between Manufacturer Identifiers and cytogenetic maps/bands
SHDZMAPCOUNTS | Number of mapped keys for the maps in package SHDZ.db
SHDZOMIM | Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
SHDZORGANISM | The Organism for SHDZ
SHDZPATH | Mappings between probe identifiers and KEGG pathway identifiers
SHDZPATH2PROBE | Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
SHDZPFAM | Map Manufacturer IDs to Pfam IDs
SHDZPMID | Map between Manufacturer Identifiers and PubMed Identifiers
SHDZPMID2PROBE | Map between PubMed Identifiers and Manufacturer Identifiers
SHDZPROSITE | Map Manufacturer IDs to PROSITE ID
SHDZREFSEQ | Map between Manufacturer Identifiers and RefSeq Identifiers
SHDZSYMBOL | Map between Manufacturer Identifiers and Gene Symbols
SHDZUNIGENE | Map between Manufacturer Identifiers and UniGene cluster identifiers
SHDZUNIPROT | Map Uniprot accession numbers with Entrez Gene identifiers
SHDZUNIPROT2PROBE | Map Uniprot accession numbers with Entrez Gene identifiers
SHDZ_dbconn | Collect information about the package annotation DB
SHDZ_dbfile | Collect information about the package annotation DB
SHDZ_dbInfo | Collect information about the package annotation DB
SHDZ_dbschema | Collect information about the package annotation DB