Plots diffusion components from a Diffusion Map and the accompanying Diffusion Pseudo Time (DPT
)
plot.DPT(x, root = NULL, paths_to = integer(0L), dcs = 1:2, divide = integer(0L), w_width = 0.1, col_by = "dpt", col_path = rev(palette()), col_tip = "red", ..., col = NULL, legend_main = col_by) # S4 method for DPT,numeric plot(x, y, ...) # S4 method for DPT,missing plot(x, y, ...)
x | A |
---|---|
paths_to | Numeric Branch IDs. Are used as target(s) for the path(s) to draw. |
dcs | The dimensions to use from the DiffusionMap |
divide | If |
w_width | Window width for smoothing the path (see |
col_by | Color by 'dpt' (DPT starting at |
col_path | Colors for the path or a function creating n colors |
col_tip | Color for branch tips |
... | Graphical parameters supplied to |
col | See |
legend_main | See |
y, root | Root branch ID. Will be used as the start of the DPT. (default: lowest branch ID)
(If longer than size 1, will be interpreted as |
The return value of the underlying call is returned, i.e. a scatterplot3d or rgl object for 3D plots.