xMLrename | R Documentation |
xMLrename
is supposed to rename predictors used in machine
learning. It returns an object of class "sTarget".
xMLrename(sTarget, old_names, new_names)
sTarget |
an object of class "sTarget" |
old_names |
a vector for the original names of predictors to be renamed |
new_names |
a vector for the new names |
an object of class "sTarget"
none
xMLrandomforest
## Not run: # Load the library library(Pi) ## End(Not run) RData.location <- "http://galahad.well.ox.ac.uk/bigdata" ## Not run: old_names <- colnames(sTarget$predictor)[-c(1,2)] old_names_1 <- c('nGene_20000_constant', 'eGene_CD14', 'eGene_LPS2', 'eGene_LPS24', 'eGene_IFN', 'eGene_Bcell', 'eGene_CD4', 'eGene_CD8', 'eGene_Neutrophil', 'eGene_NK', 'eGene_Blood', 'cGene_Monocytes', 'cGene_Macrophages_M0', 'cGene_Macrophages_M1', 'cGene_Macrophages_M2', 'cGene_Neutrophils', 'cGene_Naive_CD4_T_cells', 'cGene_Total_CD4_T_cells', 'cGene_Naive_CD8_T_cells', 'cGene_Total_CD8_T_cells', 'cGene_Naive_B_cells', 'cGene_Total_B_cells', 'dGene', 'pGene', 'fGene') old_names_2 <- c('nGene_20000_constant', 'eGene_Pi_eQTL_CD14', 'eGene_Pi_eQTL_LPS2', 'eGene_Pi_eQTL_LPS24', 'eGene_Pi_eQTL_IFN', 'eGene_Pi_eQTL_Bcell', 'eGene_Pi_eQTL_CD4', 'eGene_Pi_eQTL_CD8', 'eGene_Pi_eQTL_Neutrophil', 'eGene_Pi_eQTL_NK', 'eGene_Pi_eQTL_Blood', 'cGene_Monocytes', 'cGene_Macrophages_M0', 'cGene_Macrophages_M1', 'cGene_Macrophages_M2', 'cGene_Neutrophils', 'cGene_Naive_CD4_T_cells', 'cGene_Total_CD4_T_cells', 'cGene_Naive_CD8_T_cells', 'cGene_Total_CD8_T_cells', 'cGene_Naive_B_cells', 'cGene_Total_B_cells', 'dGene', 'pGene', 'fGene') new_names <- c('nearbyGenes_nGene: nearby genes', 'eQTL_eGene: resting state (CD14+)', 'eQTL_eGene: activating state (CD14+ by LPS2h)', 'eQTL_eGene: activating state (CD14+ by LPS24h)', 'eQTL_eGene: activating state (CD14+ by IFN24h)', 'eQTL_eGene: B cells', 'eQTL_eGene: CD4+ T cells', 'eQTL_eGene: CD8+ T cells', 'eQTL_eGene: neutrophils', 'eQTL_eGene: NK cells','eQTL_eGene: peripheral blood', 'HiC_cGene: monocytes', 'HiC_cGene: macrophages (M0)', 'HiC_cGene: macrophages (M1)', 'HiC_cGene: macrophages (M2)', 'HiC_cGene: neutrophils', 'HiC_cGene: CD4+ T cells (naive)', 'HiC_cGene: CD4+ T cells (total)', 'HiC_cGene: CD8+ T cells (naive)', 'HiC_cGene: CD8+ T cells (total)', 'HiC_cGene: B cells (naive)', 'HiC_cGene: B cells (total)', 'Annotation_dGene: disease genes', 'Annotation_pGene: phenotype genes', 'Annotation_fGene: function genes') sTarget_renamed <- xMLrename(sTarget, old_names_1, new_names) sTarget_renamed <- xMLrename(sTarget_renamed, old_names_2, new_names) ## End(Not run)