UMLS-Interface

umls_query.pl


SYNOPSIS

This program takes in a term and returns all of its associated CUIs


USAGE

Usage: queryUMLS.pl --username STRING --password STRING [OPTIONS] TERM1


INPUT

Required Arguments:

--username STRING

Username is required to access the umls database on MySql

--password STRING

Password is required to access the umls database on MySql

Optional Arguments:

--hostname STRING

Hostname where mysql is located. DEFAULT: localhost

--socket STRING

The socket your mysql is using. DEFAULT: /tmp/mysql.sock

--database STRING

Database contain UMLS DEFAULT: umls

--help

Displays the quick summary of program options.

--version

Displays the version information.


OUTPUT

List of CUIs in the standard out


SYSTEM REQUIREMENTS


AUTHOR

 Bridget T. McInnes, University of Minnesota


COPYRIGHT

Copyright (c) 2007,

 Bridget T. McInnes, University of Minnesota
 bthomson at cs.umn.edu
    
 Ted Pedersen, University of Minnesota Duluth
 tpederse at d.umn.edu

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to:

 The Free Software Foundation, Inc.,
 59 Temple Place - Suite 330,
 Boston, MA  02111-1307, USA.