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BioJava - Components for developing bioinformatics applications in Java

BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.

The developers note that there have been some problems with the Classic VM in Java 1.2; Hotspot for Java 1.2 works fine.

Obtaining

Web pagehttp://www.biojava.org/
Source tarballhttp://biojava.org/download/source/biojava-1.21.tar.gz
Source informationhttp://www.biojava.org/download/
Version 1.21 (stable) released on 2002-03-15
Licensed under LGPL.
This is not a GNU package.

Documentation

User tutorial available in HTML format from http://www.biojava.org/tutorials/index.html; User demos available in HTML format from http://www.biojava.org/tutorials/
Support contacts

Help List<biojava-l@biojava.org> http://biojava.org/mailman/listinfo/biojava-l
Developer List<biojava-l@biojava.org> http://biojava.org/mailman/listinfo/biojava-l

Project contacts

Maintainers
Developers
Sponsors
  • Genetics Institue, Inc.
  • Compaq Bioinformatics Information Centre

Related information

Source repository:pserver:cvs@cvs.open-bio.org:/home/repository/bioperl http://cvs.biojava.org/
Interfacescommand line
Source languagesJava
Use requirementsJVM 1.2 or later (developers note that there have been some problems with the Classic VM in Java 1.2; Hotspot for Java 1.2 works fine
Build prerequisitesXerces-J XML parser; Java bytecode generation library; Ant (http://jakarta.apache.org/)

Entry information

License verified byJanet Casey <jcasey@gnu.org> on 2002-03-15
Entry compiled byJanet Casey <jcasey@gnu.org>

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Copyright © 2000, 2001, 2002 Free Software Foundation, Inc.

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