CRAN Package Check Results for Package CytoProfile

Last updated on 2025-12-06 17:48:32 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 21.82 265.58 287.40 OK
r-devel-linux-x86_64-debian-gcc 0.2.2 0.31 2.82 3.13 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.2 111.00 348.80 459.80 ERROR
r-devel-linux-x86_64-fedora-gcc 0.2.2 144.00 439.54 583.54 ERROR
r-devel-windows-x86_64 0.2.2 22.00 205.00 227.00 OK
r-patched-linux-x86_64 0.2.2 21.40 255.34 276.74 OK
r-release-linux-x86_64 0.2.2 19.32 259.10 278.42 OK
r-release-macos-arm64 0.2.2 OK
r-release-macos-x86_64 0.2.2 22.00 148.00 170.00 OK
r-release-windows-x86_64 0.2.2 21.00 205.00 226.00 OK
r-oldrel-macos-arm64 0.2.2 OK
r-oldrel-macos-x86_64 0.2.2 21.00 167.00 188.00 OK
r-oldrel-windows-x86_64 0.2.2 29.00 277.00 306.00 ERROR

Check Details

Version: 0.2.2
Check: package dependencies
Result: ERROR Package required but not available: ‘mixOmics’ Packages suggested but not available for checking: 'spelling', 'knitr', 'rmarkdown', 'devtools' VignetteBuilder package required for checking but not installed: ‘knitr’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘getting_started.Rmd’ using rmarkdown Warning: ggrepel: 6 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 2 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from getting_started.Rmd:316-338 [ML1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `confusionMatrix.default()`: ! The data must contain some levels that overlap the reference. --- Backtrace: ▆ 1. └─CytoProfile::cyt_xgb(...) 2. ├─caret::confusionMatrix(as.factor(cv_pred_labels), as.factor(actual_labels)) 3. └─caret:::confusionMatrix.default(as.factor(cv_pred_labels), as.factor(actual_labels)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'getting_started.Rmd' failed with diagnostics: The data must contain some levels that overlap the reference. --- failed re-building ‘getting_started.Rmd’ SUMMARY: processing the following file failed: ‘getting_started.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64