* using log directory 'd:/Rcompile/CRANpkg/local/4.3/PubChemR.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'PubChemR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PubChemR' version '2.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PubChemR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [19s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [62s] ERROR
  Running 'testthat.R' [61s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(PubChemR)
  > 
  > # Functions used globally in package tests (testthat) ----
  > allSuccess <- function(object){
  +   all(unlist(lapply(object$result, "[[", "success")))
  + }
  > 
  > testRequest <- function(object, ...){
  +   test_that(paste0("pulling via '", request_args(object, "namespace"), "' is succesfull"), {
  +     expect_true(allSuccess(object))
  +   })
  + 
  +   test_that("prints output to the R Console", {
  +     expect_output(print(object))
  +   })
  + }
  > 
  > # Set 'skipTests' FALSE to run test codes. This is set TRUE to skip
  > # all tests on GitHub actions since some of PubChem requests were incomplete due to
  > # timeout and/or API related issues. BUILD & CHECK actions on GitHub returns error
  > # even if all tests were passed on local installations of R.
  > skipTests <- FALSE
  > 
  > if (!skipTests){
  +   test_check("PubChemR")
  + }
  The file has been saved to 'D:\temp\2024_12_13_01_50_00_10108\RtmpwJ2JtY/aspirin.json'
  The file has been saved to 'D:\temp\2024_12_13_01_50_00_10108\RtmpwJ2JtY/aspirin.json'
  The file has been saved to 'D:\temp\2024_12_13_01_50_00_10108\RtmpwJ2JtY/aspirin.json'
  The file has been saved to 'D:\temp\2024_12_13_01_50_00_10108\RtmpwJ2JtY/aspirin.json'
  The file has been saved to 'D:\temp\2024_12_13_01_50_00_10108\RtmpwJ2JtY/aspirin.sdf'
  
  Request failed [400]. Retrying in 1.2 seconds...
  Request failed [400]. Retrying in 7.1 seconds...
  SDF file saved successfully:
    File Name: 'aspirin_20241213_082505.sdf'
    Saved at: D:\temp\2024_12_13_01_50_00_10108\RtmpwJ2JtY
  SDF file saved successfully:
    File Name: 'file.sdf'
    Saved at: D:\temp\2024_12_13_01_50_00_10108\RtmpwJ2JtY
  'path' is not specified. Saving files into a temporary folder.
  SDF file saved successfully:
    File Name: 'file.sdf'
    Saved at: D:\temp\2024_12_13_01_50_00_10108\RtmpwJ2JtY
  
   PubChem Substance Details (comment)
  
   Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
   Is a reactant of enzyme EC: 3.1.1.55
  
  
   PubChem Substance Details (comment)
  
   Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
   Is a reactant of enzyme EC: 3.1.1.55
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 201 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • empty test (1): 'test-00_globals.R:21:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-get_substances.R:45:3'): NULL returns for unknown/empty slots. ──
  retrieve(tmp, .slot = "comment", .to.data.frame = TRUE, .idx = 132) is not NULL
  
  `actual` is an S3 object of class <tbl_df/tbl/data.frame>, a list
  `expected` is NULL
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 201 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [216s] OK
* checking PDF version of manual ... [24s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 1 ERROR