* using log directory 'd:/Rcompile/CRANpkg/local/4.1/rxode2.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'rxode2/DESCRIPTION' ... OK * this is package 'rxode2' version '2.0.12' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'rxode2' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/4.1/rxode2.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'rxode2' ... ** package 'rxode2' successfully unpacked and MD5 sums checked ** using staged installation rm: cannot remove 'workaround.Rout': No such file or directory --------[[begin src/Makevars.win]]-------- # -*- mode: makefile-gmake -*- BH=d:/RCompile/CRANpkg/lib/4.1/BH/include ################################################################################ ## Package library flags. PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) # Release options PKG_CFLAGS = -D_isrxode2_ PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"$(BH)" --------[[end src/Makevars.win]]-------- --------[begin R/rxode2_md5.R]-------- rxode2.md5 <- "2da5a6a2bbff2f0f79b2d345a6a81f6f" --------[end R/rxode2_md5.R]-------- ** libs *** arch - i386 make[1]: Entering directory '/d/temp/RtmpozpC5v/R.INSTALL1b9e8390f36e8/rxode2/src-i386' d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c approx.c -o approx.o In file included from approx.c:9: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from approx.c:9: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from approx.c:9: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from approx.c:9: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from approx.c:9: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from approx.c:9: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from approx.c:9: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost.cpp -o boost.o In file included from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/aux_/na_assert.hpp:23, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/arg.hpp:25, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/placeholders.hpp:24, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/iterator/iterator_categories.hpp:16, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/iterator/iterator_facade.hpp:13, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/range/iterator_range_core.hpp:27, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/lexical_cast.hpp:30, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/math/tools/convert_from_string.hpp:15, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/math/constants/constants.hpp:14, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/math/special_functions/gamma.hpp:24, from boost.cpp:12: d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] failed ************ (Pred::************ ^ d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] failed ************ (boost::mpl::not_::************ ^ d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c box.c -o box.o In file included from box.c:2: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from box.c:2: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from box.c:2: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from box.c:2: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from box.c:2: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from box.c:2: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from box.c:2: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c call_dvode.c -o call_dvode.o In file included from call_dvode.c:14: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cfode.c -o cfode.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cfode_static.c -o cfode_static.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c common.c -o common.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c corfailure.c -o corfailure.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c correction.c -o correction.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c daxpy.c -o daxpy.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ddot.c -o ddot.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgefa.c -o dgefa.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgesl.c -o dgesl.o d:/Compiler/rtools40/mingw32/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dgpadm.f -o dgpadm.o d:/Compiler/rtools40/mingw32/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dlsoda.f -o dlsoda.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dop853.c -o dop853.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dscal.c -o dscal.o d:/Compiler/rtools40/mingw32/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dsphiv.f -o dsphiv.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c etTran.cpp -o etTran.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c expandGrid.cpp -o expandGrid.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c expm.cpp -o expm.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fnorm.c -o fnorm.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c forder.cpp -o forder.o forder.cpp: In function 'void avoid_openmp_hang_within_fork()': forder.cpp:185:48: warning: statement has no effect [-Wunused-value] pthread_atfork(&when_fork, &after_fork, NULL); ^ d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c handle_evid.c -o handle_evid.o In file included from handle_evid.c:10: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c idamax.c -o idamax.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o In file included from init.c:10: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from init.c:10: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from init.c:10: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from init.c:10: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from init.c:10: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from init.c:10: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from init.c:10: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c intdy.c -o intdy.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lsoda.c -o lsoda.o d:/Compiler/rtools40/mingw32/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c matexp.f -o matexp.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c matexp_HM98.c -o matexp_HM98.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c methodswitch.c -o methodswitch.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nearPD.cpp -o nearPD.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c omegaChol.c -o omegaChol.o d:/Compiler/rtools40/mingw32/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c opkda2.f -o opkda2.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c orderswitch.c -o orderswitch.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c par_solve.cpp -o par_solve.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c prja.c -o prja.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rprintf.c -o rprintf.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxData.cpp -o rxData.o rxData.cpp: In function 'Rcpp::List rxDrop(Rcpp::CharacterVector, Rcpp::List, bool)': rxData.cpp:297:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (unsigned int i = 0; i < inNames.size(); ++i) { ~~^~~~~~~~~~~~~~~~ rxData.cpp: In function 'Rcpp::List rxModelVars_character(const RObject&)': rxData.cpp:803:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (unsigned int i = 0; i < modListNames.size(); i++){ ~~^~~~~~~~~~~~~~~~~~~~~ rxData.cpp: In function 'Rcpp::List rxModelVars_list(const RObject&)': rxData.cpp:832:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (unsigned int i = 0; i < nobj.size(); i++){ ~~^~~~~~~~~~~~~ rxData.cpp: In function 'Rcpp::RObject rxState(const RObject&, Rcpp::RObject)': rxData.cpp:944:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (unsigned int i = 0; i < states.size(); i++){ ~~^~~~~~~~~~~~~~~ rxData.cpp: In function 'void rxSimOmega(bool&, bool&, Rcpp::NumericMatrix&, Rcpp::CharacterVector&, Rcpp::NumericMatrix&, Rcpp::List&, Rcpp::CharacterVector&, Rcpp::NumericMatrix&, std::__cxx11::string, const RObject&, const Rcpp::Nullable >&, const NumericVector&, const NumericVector&, const bool&, std::__cxx11::string, int, double, int, int, const LogicalVector&)': rxData.cpp:1687:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (unsigned int i = 0; i < omegaN.size(); i++){ ~~^~~~~~~~~~~~~~~ rxData.cpp: In function 'void updateSolveEnvPost(Rcpp::Environment)': rxData.cpp:2314:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (i = 0; i < ppos.size(); i++){ ~~^~~~~~~~~~~~~ rxData.cpp:2334:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (i = 0; i < ppos.size(); i++){ ~~^~~~~~~~~~~~~ rxData.cpp:2391:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (i = 0; i < ppos.size();i++){ ~~^~~~~~~~~~~~~ d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxInv.cpp -o rxInv.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxOptRep.cpp -o rxOptRep.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxode2_df.cpp -o rxode2_df.o rxode2_df.cpp: In function 'SEXPREC* rxode2_df(int, int)': rxode2_df.cpp:633:23: warning: 'whI' may be used uninitialized in this function [-Wmaybe-uninitialized] if (nWhI == whI && nCmt == cmt){ ^~ rxode2_df.cpp:633:39: warning: 'cmt' may be used uninitialized in this function [-Wmaybe-uninitialized] if (nWhI == whI && nCmt == cmt){ ~~~~~~~~~~~~^~~~~~~~~~~~~~ d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxode2parse.cpp -o rxode2parse.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxode2random.cpp -o rxode2random.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sbuf.c -o sbuf.o sbuf.c:1: warning: ISO C forbids an empty translation unit [-Wpedantic] d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c scaleh.c -o scaleh.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c solsy.c -o solsy.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stoda.c -o stoda.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c strdup_printf.c -o strdup_printf.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c strncmp.c -o strncmp.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utilc.c -o utilc.o In file included from utilc.c:21: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from utilc.c:21: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utilcpp.cpp -o utilcpp.o d:/Compiler/rtools40/mingw32/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vmnorm.c -o vmnorm.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rxode2.dll tmp.def RcppExports.o approx.o boost.o box.o call_dvode.o cfode.o cfode_static.o common.o corfailure.o correction.o daxpy.o ddot.o dgefa.o dgesl.o dgpadm.o dlsoda.o dop853.o dscal.o dsphiv.o etTran.o expandGrid.o expm.o fnorm.o forder.o handle_evid.o idamax.o init.o intdy.o lsoda.o matexp.o matexp_HM98.o methodswitch.o nearPD.o omegaChol.o opkda2.o orderswitch.o par_solve.o prja.o rprintf.o rxData.o rxInv.o rxOptRep.o rxode2_df.o rxode2parse.o rxode2random.o sbuf.o scaleh.o solsy.o stoda.o strdup_printf.o strncmp.o utilc.o utilcpp.o vmnorm.o -LD:/RCompile/recent/R-4.1.3/bin/i386 -lRlapack -LD:/RCompile/recent/R-4.1.3/bin/i386 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 -Ld:/Compiler/gcc-4.9.3/local330/lib -lgfortran -lm -lquadmath -LD:/RCompile/recent/R-4.1.3/bin/i386 -lR D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1091d): undefined reference to `_rxode2_lineFree' D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x10925): undefined reference to `_rxode2_lineFree' D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1a272): undefined reference to `_rxode2_lineIni' D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1a286): undefined reference to `_rxode2_lineIni' D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1a2bf): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1a2fa): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1a35c): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1a39a): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1a4a9): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1a4ea): more undefined references to `_rxode2_addLine' follow collect2.exe: error: ld returned 1 exit status make[1]: Leaving directory '/d/temp/RtmpozpC5v/R.INSTALL1b9e8390f36e8/rxode2/src-i386' make[1]: Entering directory '/d/temp/RtmpozpC5v/R.INSTALL1b9e8390f36e8/rxode2/src-i386' make[1]: Leaving directory '/d/temp/RtmpozpC5v/R.INSTALL1b9e8390f36e8/rxode2/src-i386' installing via 'install.libs.R' to d:/Rcompile/CRANpkg/lib/4.1/00LOCK-rxode2/00new/rxode2 *** arch - x64 make[1]: Entering directory '/d/temp/RtmpozpC5v/R.INSTALL1b9e8390f36e8/rxode2/src-x64' d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c approx.c -o approx.o In file included from approx.c:9: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from approx.c:9: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from approx.c:9: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from approx.c:9: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from approx.c:9: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from approx.c:9: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from approx.c:9: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from approx.c:9: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c boost.cpp -o boost.o In file included from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/aux_/na_assert.hpp:23, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/arg.hpp:25, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/placeholders.hpp:24, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/iterator/iterator_categories.hpp:16, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/iterator/iterator_facade.hpp:13, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/range/iterator_range_core.hpp:27, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/lexical_cast.hpp:30, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/math/tools/convert_from_string.hpp:15, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/math/constants/constants.hpp:14, from d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/math/special_functions/gamma.hpp:24, from boost.cpp:12: d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] failed ************ (Pred::************ ^ d:/RCompile/CRANpkg/lib/4.1/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] failed ************ (boost::mpl::not_::************ ^ d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c box.c -o box.o In file included from box.c:2: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from box.c:2: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from box.c:2: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from box.c:2: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from box.c:2: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from box.c:2: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from box.c:2: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from box.c:2: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c call_dvode.c -o call_dvode.o In file included from call_dvode.c:14: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from call_dvode.c:14: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from call_dvode.c:14: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cfode.c -o cfode.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cfode_static.c -o cfode_static.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c common.c -o common.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c corfailure.c -o corfailure.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c correction.c -o correction.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c daxpy.c -o daxpy.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ddot.c -o ddot.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgefa.c -o dgefa.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgesl.c -o dgesl.o d:/Compiler/rtools40/mingw64/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dgpadm.f -o dgpadm.o d:/Compiler/rtools40/mingw64/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dlsoda.f -o dlsoda.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dop853.c -o dop853.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dscal.c -o dscal.o d:/Compiler/rtools40/mingw64/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dsphiv.f -o dsphiv.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c etTran.cpp -o etTran.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c expandGrid.cpp -o expandGrid.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c expm.cpp -o expm.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fnorm.c -o fnorm.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c forder.cpp -o forder.o forder.cpp: In function 'void avoid_openmp_hang_within_fork()': forder.cpp:185:48: warning: statement has no effect [-Wunused-value] pthread_atfork(&when_fork, &after_fork, NULL); ^ d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c handle_evid.c -o handle_evid.o In file included from handle_evid.c:10: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from handle_evid.c:10: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from handle_evid.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c idamax.c -o idamax.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o In file included from init.c:10: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from init.c:10: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from init.c:10: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from init.c:10: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from init.c:10: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from init.c:10: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from init.c:10: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from init.c:10: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c intdy.c -o intdy.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lsoda.c -o lsoda.o d:/Compiler/rtools40/mingw64/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c matexp.f -o matexp.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c matexp_HM98.c -o matexp_HM98.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c methodswitch.c -o methodswitch.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nearPD.cpp -o nearPD.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c omegaChol.c -o omegaChol.o d:/Compiler/rtools40/mingw64/bin/gfortran -fno-optimize-sibling-calls -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c opkda2.f -o opkda2.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c orderswitch.c -o orderswitch.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c par_solve.cpp -o par_solve.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c prja.c -o prja.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rprintf.c -o rprintf.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxData.cpp -o rxData.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxInv.cpp -o rxInv.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxOptRep.cpp -o rxOptRep.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxode2_df.cpp -o rxode2_df.o rxode2_df.cpp: In function 'SEXPREC* rxode2_df(int, int)': rxode2_df.cpp:633:23: warning: 'whI' may be used uninitialized in this function [-Wmaybe-uninitialized] if (nWhI == whI && nCmt == cmt){ ^~ rxode2_df.cpp:633:39: warning: 'cmt' may be used uninitialized in this function [-Wmaybe-uninitialized] if (nWhI == whI && nCmt == cmt){ ~~~~~~~~~~~~^~~~~~~~~~~~~~ d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxode2parse.cpp -o rxode2parse.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rxode2random.cpp -o rxode2random.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sbuf.c -o sbuf.o sbuf.c:1: warning: ISO C forbids an empty translation unit [-Wpedantic] d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c scaleh.c -o scaleh.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c solsy.c -o solsy.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stoda.c -o stoda.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c strdup_printf.c -o strdup_printf.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c strncmp.c -o strncmp.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utilc.c -o utilc.o In file included from utilc.c:21: ../inst/include/rxode2.h:78:18: warning: redefinition of typedef 't_F' [-Wpedantic] typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:266:18: note: previous declaration of 't_F' was here typedef double (*t_F)(int _cSub, int _cmt, double _amt, double t, double *y); ^~~ In file included from utilc.c:21: ../inst/include/rxode2.h:79:18: warning: redefinition of typedef 't_LAG' [-Wpedantic] typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:267:18: note: previous declaration of 't_LAG' was here typedef double (*t_LAG)(int _cSub, int _cmt, double t); ^~~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:80:18: warning: redefinition of typedef 't_RATE' [-Wpedantic] typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:268:18: note: previous declaration of 't_RATE' was here typedef double (*t_RATE)(int _cSub, int _cmt, double _amt, double t); ^~~~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:81:18: warning: redefinition of typedef 't_DUR' [-Wpedantic] typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:269:18: note: previous declaration of 't_DUR' was here typedef double (*t_DUR)(int _cSub, int _cmt, double _amt, double t); ^~~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:83:16: warning: redefinition of typedef 't_calc_mtime' [-Wpedantic] typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:271:16: note: previous declaration of 't_calc_mtime' was here typedef void (*t_calc_mtime)(int cSub, double *mtime); ^~~~~~~~~~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:85:16: warning: redefinition of typedef 't_ME' [-Wpedantic] typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:273:16: note: previous declaration of 't_ME' was here typedef void (*t_ME)(int _cSub, double _t, double t, double *_mat, const double *__zzStateVar__); ^~~~ In file included from utilc.c:21: ../inst/include/rxode2.h:86:16: warning: redefinition of typedef 't_IndF' [-Wpedantic] typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ In file included from d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parse.h:52, from ../inst/include/rxode2.h:13, from utilc.c:21: d:/RCompile/CRANpkg/lib/4.1/rxode2parse/include/rxode2parseStruct.h:274:16: note: previous declaration of 't_IndF' was here typedef void (*t_IndF)(int _cSub, double _t, double t, double *_mat); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -I"d:/RCompile/CRANpkg/lib/4.1/BH/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utilcpp.cpp -o utilcpp.o d:/Compiler/rtools40/mingw64/bin/gcc -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/rxode2parse/include' -I'd:/RCompile/CRANpkg/lib/4.1/rxode2random/include' -I'd:/RCompile/CRANpkg/lib/4.1/PreciseSums/include' -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/BH/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -D_isrxode2_ -pedantic -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vmnorm.c -o vmnorm.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rxode2.dll tmp.def RcppExports.o approx.o boost.o box.o call_dvode.o cfode.o cfode_static.o common.o corfailure.o correction.o daxpy.o ddot.o dgefa.o dgesl.o dgpadm.o dlsoda.o dop853.o dscal.o dsphiv.o etTran.o expandGrid.o expm.o fnorm.o forder.o handle_evid.o idamax.o init.o intdy.o lsoda.o matexp.o matexp_HM98.o methodswitch.o nearPD.o omegaChol.o opkda2.o orderswitch.o par_solve.o prja.o rprintf.o rxData.o rxInv.o rxOptRep.o rxode2_df.o rxode2parse.o rxode2random.o sbuf.o scaleh.o solsy.o stoda.o strdup_printf.o strncmp.o utilc.o utilcpp.o vmnorm.o -LD:/RCompile/recent/R-4.1.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.1.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 -Ld:/Compiler/gcc-4.9.3/local330/lib -lgfortran -lm -lquadmath -LD:/RCompile/recent/R-4.1.3/bin/x64 -lR D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x12c42): undefined reference to `_rxode2_lineFree' D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x12c4e): undefined reference to `_rxode2_lineFree' D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1de2c): undefined reference to `_rxode2_lineIni' D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1de40): undefined reference to `_rxode2_lineIni' D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1de79): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1deb1): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1df12): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1df50): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1e071): undefined reference to `_rxode2_addLine' D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: rxData.o:rxData.cpp:(.text+0x1e0a4): more undefined references to `_rxode2_addLine' follow collect2.exe: error: ld returned 1 exit status make[1]: Leaving directory '/d/temp/RtmpozpC5v/R.INSTALL1b9e8390f36e8/rxode2/src-x64' make[1]: Entering directory '/d/temp/RtmpozpC5v/R.INSTALL1b9e8390f36e8/rxode2/src-x64' make[1]: Leaving directory '/d/temp/RtmpozpC5v/R.INSTALL1b9e8390f36e8/rxode2/src-x64' installing via 'install.libs.R' to d:/Rcompile/CRANpkg/lib/4.1/00LOCK-rxode2/00new/rxode2 ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading Error: object '.getLastIdLvl' is not exported by 'namespace:rxode2parse' Execution halted ERROR: lazy loading failed for package 'rxode2' * removing 'd:/Rcompile/CRANpkg/lib/4.1/rxode2' * restoring previous 'd:/Rcompile/CRANpkg/lib/4.1/rxode2'