* using log directory 'd:/Rcompile/CRANpkg/local/4.1/pedtools.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'pedtools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pedtools' version '2.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pedtools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [27s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [14s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [9s] ERROR
  Running 'testthat.R' [9s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pedtools)
  > 
  > test_check("pedtools")
  [ FAIL 2 | WARN 0 | SKIP 2 | PASS 588 ]
  
  == Skipped tests ===============================================================
  * Identity examples - takes long time (1)
  * TODO: Mendelian check for X sibships (1)
  
  == Failed tests ================================================================
  -- Failure ('test-founder-inbreeding.R:24:3'): setFounderInbreeding works on lists --
  fi(y1) not equal to c(`1` = 1, `2` = 1, `4` = 1).
  3/3 mismatches (average diff: 1)
  [1] 0 - 1 == -1
  [2] 0 - 1 == -1
  [3] 0 - 1 == -1
  -- Failure ('test-founder-inbreeding.R:27:3'): setFounderInbreeding works on lists --
  fi(y2) not equal to c(`1` = 0, `2` = 1, `4` = 0).
  1/3 mismatches
  [2] 0 - 1 == -1
  
  [ FAIL 2 | WARN 0 | SKIP 2 | PASS 588 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [7s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR