* using log directory 'd:/Rcompile/CRANpkg/local/4.1/pdp.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'pdp/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'pdp' version '0.8.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pdp' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [3s] OK ** running examples for arch 'x64' ... [3s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [126s] ERROR Running 'tinytest.R' [126s] Running the tests in 'tests/tinytest.R' failed. Complete output: > # Run tests in local environment > if (requireNamespace("tinytest", quietly = TRUE)) { + home <- length(unclass(packageVersion("pdp"))[[1]]) == 4 + tinytest::test_package("pdp", at_home = home) + } test_cats_argument.R.......... 0 tests test_cats_argument.R.......... 0 tests test_cats_argument.R.......... 0 tests test_cats_argument.R.......... 0 tests test_cats_argument.R.......... 0 tests test_cats_argument.R.......... 0 tests test_cats_argument.R.......... 0 tests test_cats_argument.R.......... 0 tests test_cats_argument.R.......... 4 tests OK randomForest 4.7-1.1 Type rfNews() to see new features/changes/bug fixes. test_cats_argument.R.......... 5 tests OK 0.5s test_exemplar.R............... 0 tests test_exemplar.R............... 0 tests test_exemplar.R............... 0 tests test_exemplar.R............... 1 tests OK 31ms test_get_training_data.R...... 0 tests Attaching package: 'ggplot2' The following object is masked from 'package:randomForest': margin test_get_training_data.R...... 2 tests OK test_get_training_data.R...... 5 tests OK test_get_training_data.R...... 8 tests OK Attaching package: 'ranger' The following object is masked from 'package:randomForest': importance test_get_training_data.R...... 10 tests OK 5.6s test_pkg_C50.R................ 0 tests test_pkg_C50.R................ 4 tests OK 0.2s test_pkg_MASS.R............... 0 tests test_pkg_MASS.R............... 0 tests test_pkg_MASS.R............... 8 tests OK 2.7s test_pkg_e1071.R.............. 0 tests test_pkg_e1071.R.............. 0 tests test_pkg_e1071.R.............. 0 tests test_pkg_e1071.R.............. 0 tests test_pkg_e1071.R.............. 8 tests OK 1.9s Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric test_pkg_party.R.............. 12 tests OK 1.6s test_pkg_ranger.R............. 0 tests test_pkg_ranger.R............. 0 tests test_pkg_ranger.R............. 0 tests 0ms test_pkg_stats.R.............. 10 tests OK 2.3s test_pkg_xgboost.R............ 0 tests test_pkg_xgboost.R............ 0 tests test_pkg_xgboost.R............ 0 tests test_pkg_xgboost.R............ 0 tests test_pkg_xgboost.R............ 0 tests test_pkg_xgboost.R............ 0 tests test_pkg_xgboost.R............ 12 tests OK 4.8s test_pred_grid.R.............. 0 tests test_pred_grid.R.............. 0 tests test_pred_grid.R.............. 0 tests test_pred_grid.R.............. 0 tests test_pred_grid.R.............. 0 tests test_pred_grid.R.............. 1 tests OK test_pred_grid.R.............. 2 tests OK test_pred_grid.R.............. 3 tests OK test_pred_grid.R.............. 4 tests OK test_pred_grid.R.............. 5 tests OK test_pred_grid.R.............. 6 tests OK test_pred_grid.R.............. 6 tests OK test_pred_grid.R.............. 6 tests OK test_pred_grid.R.............. 7 tests OK 16ms test_xgboost_pima.R........... 12 tests OK 8.1s All ok, 89 results (2m 3.8s) Warning messages: 1: In partial.default(fit4, pred.var = "x.4", prob = TRUE, ice = TRUE, : Centering may result in probabilities outside of [0, 1]. 2: glm.fit: algorithm did not converge 3: glm.fit: fitted probabilities numerically 0 or 1 occurred 4: In partial.default(fit2_glm, pred.var = "x.3", prob = TRUE, ice = TRUE, : Centering may result in probabilities outside of [0, 1]. > > proc.time() user system elapsed 126.22 1.12 125.53 ** running tests for arch 'x64' ... [124s] OK Running 'tinytest.R' [124s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [11s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR