* using log directory 'd:/Rcompile/CRANpkg/local/4.1/mcglm.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'mcglm/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mcglm' version '0.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mcglm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] ERROR
Running examples in 'mcglm-Ex.R' failed
The error most likely occurred in:

> ### Name: Hunting
> ### Title: Hunting in Pico Basile, Bioko Island, Equatorial Guinea.
> ### Aliases: Hunting
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(mcglm)
> library(Matrix)
> data(Hunting, package="mcglm")
> formu <- OT ~ METHOD*ALT + SEX + ALT*poly(MONTH, 4)
> Z0 <- mc_id(Hunting)
> Z1 <- mc_mixed(~0 + HUNTER.MONTH, data = Hunting)
> fit <- mcglm(linear_pred = c(formu), matrix_pred = list(c(Z0, Z1)),
+             link = c("log"), variance = c("poisson_tweedie"),
+             power_fixed = c(FALSE),
+             control_algorithm = list(max_iter = 100),
+             offset = list(log(Hunting$OFFSET)), data = Hunting)
Automatic initial values selected. 
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'forceSymmetric' for signature '"dgCMatrix", "logical"'
Error: $ operator is invalid for atomic vectors
Execution halted
** running examples for arch 'x64' ... [4s] ERROR
Running examples in 'mcglm-Ex.R' failed
The error most likely occurred in:

> ### Name: Hunting
> ### Title: Hunting in Pico Basile, Bioko Island, Equatorial Guinea.
> ### Aliases: Hunting
> ### Keywords: datasets
> 
> ### ** Examples
> 
> library(mcglm)
> library(Matrix)
> data(Hunting, package="mcglm")
> formu <- OT ~ METHOD*ALT + SEX + ALT*poly(MONTH, 4)
> Z0 <- mc_id(Hunting)
> Z1 <- mc_mixed(~0 + HUNTER.MONTH, data = Hunting)
> fit <- mcglm(linear_pred = c(formu), matrix_pred = list(c(Z0, Z1)),
+             link = c("log"), variance = c("poisson_tweedie"),
+             power_fixed = c(FALSE),
+             control_algorithm = list(max_iter = 100),
+             offset = list(log(Hunting$OFFSET)), data = Hunting)
Automatic initial values selected. 
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'forceSymmetric' for signature '"dgCMatrix", "logical"'
Error: $ operator is invalid for atomic vectors
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [11s] ERROR
  Running 'testthat.R' [11s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(mcglm)
  ----------------------------------------------------------------------
    mcglm: Multivariate Covariance Generalized Linear Models
  
    For support, collaboration or bug report, visit: 
      http://mcglm.leg.ufpr.br/
  
    mcglm version 0.7.0 (build on 2021-07-07) is now loaded.
  ----------------------------------------------------------------------
  > 
  > test_check("mcglm")
  [1] "Running test_mc_build_C.R"
  [1] "Testing covariance identity"
  [1] "OK"
  [1] "Testing covariance inverse"
  [1] "OK"
  [1] "Testing covariance expm"
  [1] "OK"
  [1] "Checking computations"
  [1] "Testing variance function: tweedie"
  [1] "OK"
  [1] "Testing variance function: binomialP"
  [1] "OK"
  [1] "Checking Poisson-Tweedie derivatives"
  [1] "Checking binomiaPQ derivatives"
  [1] "test_mc_build.C - OK"
  [1] "test_mc_build_omega.R"
  [1] "test_mc_build_omega.R - OK"
  [1] "test_mc_build_sigma.R"
  [1] "test_mc_build_sigma.R - OK"
  [1] "test_mc_build_sigma_between.R"
  [1] "test_mc_build_sigma_between.R-OK"
  [1] "Testing link functions ..."
  [1] "Testing link functions - Part II"
  [1] "Testing link functions - Part II"
  [1] "Testing Matrix linear predictor..."
  [1] "Testing Matrix linear predictor... OK"
  [1] "Testing variance function ..."
  [1] "Testing variance function ... OK"
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 370 ]
  
  == Failed tests ================================================================
  -- Error (test_mc_quasi_score.R:29:1): (code run outside of `test_that()`) -----
  Error in `(function (classes, fdef, mtable) 
  {
      methods <- .findInheritedMethods(classes, fdef, mtable)
      if (length(methods) == 1L) 
          return(methods[[1L]])
      else if (length(methods) == 0L) {
          cnames <- paste0("\"", vapply(classes, as.character, 
              ""), "\"", collapse = ", ")
          stop(gettextf("unable to find an inherited method for function %s for signature %s", 
              sQuote(fdef@generic), sQuote(cnames)), domain = NA)
      }
      else stop("Internal error in finding inherited methods; didn't return a unique method", 
          domain = NA)
  })(list(structure("dgCMatrix", package = "Matrix"), "logical"), 
      new("standardGeneric", .Data = function (x, uplo) 
      standardGeneric("forceSymmetric"), generic = structure("forceSymmetric", package = "Matrix"), 
          package = "Matrix", group = list(), valueClass = character(0), 
          signature = c("x", "uplo"), default = NULL, skeleton = (function (x, 
              uplo) 
          stop(gettextf("invalid call in method dispatch to '%s' (no default method)", 
              "forceSymmetric"), domain = NA))(x, uplo)), <environment>)`: unable to find an inherited method for function 'forceSymmetric' for signature '"dgCMatrix", "logical"'
  Backtrace:
      x
   1. \-mcglm:::mc_pearson(...) at test_mc_quasi_score.R:29:0
   2.   \-mcglm:::mc_sensitivity(product, W = W)
   3.     \-Matrix::forceSymmetric(Sensitivity, uplo = FALSE)
   4.       \-methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 370 ]
  Error: Test failures
  Execution halted
** running tests for arch 'x64' ... [12s] ERROR
  Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(mcglm)
  ----------------------------------------------------------------------
    mcglm: Multivariate Covariance Generalized Linear Models
  
    For support, collaboration or bug report, visit: 
      http://mcglm.leg.ufpr.br/
  
    mcglm version 0.7.0 (build on 2021-07-07) is now loaded.
  ----------------------------------------------------------------------
  > 
  > test_check("mcglm")
  [1] "Running test_mc_build_C.R"
  [1] "Testing covariance identity"
  [1] "OK"
  [1] "Testing covariance inverse"
  [1] "OK"
  [1] "Testing covariance expm"
  [1] "OK"
  [1] "Checking computations"
  [1] "Testing variance function: tweedie"
  [1] "OK"
  [1] "Testing variance function: binomialP"
  [1] "OK"
  [1] "Checking Poisson-Tweedie derivatives"
  [1] "Checking binomiaPQ derivatives"
  [1] "test_mc_build.C - OK"
  [1] "test_mc_build_omega.R"
  [1] "test_mc_build_omega.R - OK"
  [1] "test_mc_build_sigma.R"
  [1] "test_mc_build_sigma.R - OK"
  [1] "test_mc_build_sigma_between.R"
  [1] "test_mc_build_sigma_between.R-OK"
  [1] "Testing link functions ..."
  [1] "Testing link functions - Part II"
  [1] "Testing link functions - Part II"
  [1] "Testing Matrix linear predictor..."
  [1] "Testing Matrix linear predictor... OK"
  [1] "Testing variance function ..."
  [1] "Testing variance function ... OK"
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 370 ]
  
  == Failed tests ================================================================
  -- Error (test_mc_quasi_score.R:29:1): (code run outside of `test_that()`) -----
  Error in `(function (classes, fdef, mtable) 
  {
      methods <- .findInheritedMethods(classes, fdef, mtable)
      if (length(methods) == 1L) 
          return(methods[[1L]])
      else if (length(methods) == 0L) {
          cnames <- paste0("\"", vapply(classes, as.character, 
              ""), "\"", collapse = ", ")
          stop(gettextf("unable to find an inherited method for function %s for signature %s", 
              sQuote(fdef@generic), sQuote(cnames)), domain = NA)
      }
      else stop("Internal error in finding inherited methods; didn't return a unique method", 
          domain = NA)
  })(list(structure("dgCMatrix", package = "Matrix"), "logical"), 
      new("standardGeneric", .Data = function (x, uplo) 
      standardGeneric("forceSymmetric"), generic = structure("forceSymmetric", package = "Matrix"), 
          package = "Matrix", group = list(), valueClass = character(0), 
          signature = c("x", "uplo"), default = NULL, skeleton = (function (x, 
              uplo) 
          stop(gettextf("invalid call in method dispatch to '%s' (no default method)", 
              "forceSymmetric"), domain = NA))(x, uplo)), <environment>)`: unable to find an inherited method for function 'forceSymmetric' for signature '"dgCMatrix", "logical"'
  Backtrace:
      x
   1. \-mcglm:::mc_pearson(...) at test_mc_quasi_score.R:29:0
   2.   \-mcglm:::mc_sensitivity(product, W = W)
   3.     \-Matrix::forceSymmetric(Sensitivity, uplo = FALSE)
   4.       \-methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 370 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [9s] WARNING
Error(s) in re-building vignettes:
--- re-building 'GLMExamples.Rmd' using rmarkdown
Loading required package: mcglm
----------------------------------------------------------------------
  mcglm: Multivariate Covariance Generalized Linear Models

  For support, collaboration or bug report, visit: 
    http://mcglm.leg.ufpr.br/

  mcglm version 0.7.0 (build on 2021-07-07) is now loaded.
----------------------------------------------------------------------
Loading required package: Matrix
Quitting from lines 67-77 (GLMExamples.Rmd) 
Error: processing vignette 'GLMExamples.Rmd' failed with diagnostics:
$ operator is invalid for atomic vectors
--- failed re-building 'GLMExamples.Rmd'

--- re-building 'UniModels.Rmd' using rmarkdown
Loading required package: mcglm
----------------------------------------------------------------------
  mcglm: Multivariate Covariance Generalized Linear Models

  For support, collaboration or bug report, visit: 
    http://mcglm.leg.ufpr.br/

  mcglm version 0.7.0 (build on 2021-07-07) is now loaded.
----------------------------------------------------------------------
Loading required package: Matrix
Loading required package: mvtnorm
Loading required package: tweedie
Quitting from lines 52-80 (UniModels.Rmd) 
Error: processing vignette 'UniModels.Rmd' failed with diagnostics:
$ operator is invalid for atomic vectors
--- failed re-building 'UniModels.Rmd'

SUMMARY: processing the following files failed:
  'GLMExamples.Rmd' 'UniModels.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 4 ERRORs, 1 WARNING