* using log directory 'd:/Rcompile/CRANpkg/local/4.1/PLNmodels.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'PLNmodels/DESCRIPTION' ... OK * this is package 'PLNmodels' version '1.0.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'PLNmodels' can be installed ... ERROR Installation failed. See 'd:/Rcompile/CRANpkg/local/4.1/PLNmodels.Rcheck/00install.out' for details. * DONE The installation logfile: * installing *source* package 'PLNmodels' ... ** package 'PLNmodels' successfully unpacked and MD5 sums checked ** using staged installation ** libs *** arch - i386 make[1]: Entering directory '/d/temp/RtmpKAU5Ev/R.INSTALLd3e05cf32ce9/PLNmodels/src-i386' d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nlopt_wrapper.cpp -o nlopt_wrapper.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_diag_cov.cpp -o optim_diag_cov.o optim_diag_cov.cpp: In function 'Rcpp::List nlopt_optimize_vestep_diagonal(const List&, const List&, const mat&, const mat&, const List&)': optim_diag_cov.cpp:167:21: warning: variable 'result' set but not used [-Wunused-but-set-variable] OptimizerResult result = minimize_objective_on_parameters(optimizer.get(), objective_and_grad, parameters); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_fixed_cov.cpp -o optim_fixed_cov.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_full_cov.cpp -o optim_full_cov.o optim_full_cov.cpp: In function 'Rcpp::List nlopt_optimize_vestep(const List&, const List&, const mat&, const mat&, const List&)': optim_full_cov.cpp:175:21: warning: variable 'result' set but not used [-Wunused-but-set-variable] OptimizerResult result = minimize_objective_on_parameters(optimizer.get(), objective_and_grad, parameters); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_genet_cov.cpp -o optim_genet_cov.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_cov.cpp -o optim_rank_cov.o optim_rank_cov.cpp: In function 'Rcpp::List nlopt_optimize_vestep_rank(const List&, const List&, const mat&, const mat&, const List&)': optim_rank_cov.cpp:165:21: warning: variable 'result' set but not used [-Wunused-but-set-variable] OptimizerResult result = minimize_objective_on_parameters(optimizer.get(), objective_and_grad, parameters); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_spherical.cpp -o optim_spherical.o optim_spherical.cpp: In function 'Rcpp::List nlopt_optimize_vestep_spherical(const List&, const List&, const mat&, const mat&, const List&)': optim_spherical.cpp:166:21: warning: variable 'result' set but not used [-Wunused-but-set-variable] OptimizerResult result = minimize_objective_on_parameters(optimizer.get(), objective_and_grad, parameters); ^~~~~~ d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c packing.cpp -o packing.o d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o PLNmodels.dll tmp.def RcppExports.o nlopt_wrapper.o optim_diag_cov.o optim_fixed_cov.o optim_full_cov.o optim_genet_cov.o optim_rank_cov.o optim_spherical.o packing.o -LD:/RCompile/recent/R-4.1.3/bin/i386 -lRlapack -LD:/RCompile/recent/R-4.1.3/bin/i386 -lRblas -lgfortran -lm -lquadmath -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R-4.1.3/bin/i386 -lR make[1]: Leaving directory '/d/temp/RtmpKAU5Ev/R.INSTALLd3e05cf32ce9/PLNmodels/src-i386' make[1]: Entering directory '/d/temp/RtmpKAU5Ev/R.INSTALLd3e05cf32ce9/PLNmodels/src-i386' make[1]: Leaving directory '/d/temp/RtmpKAU5Ev/R.INSTALLd3e05cf32ce9/PLNmodels/src-i386' installing to d:/Rcompile/CRANpkg/lib/4.1/00LOCK-PLNmodels/00new/PLNmodels/libs/i386 *** arch - x64 make[1]: Entering directory '/d/temp/RtmpKAU5Ev/R.INSTALLd3e05cf32ce9/PLNmodels/src-x64' d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nlopt_wrapper.cpp -o nlopt_wrapper.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_diag_cov.cpp -o optim_diag_cov.o optim_diag_cov.cpp: In function 'Rcpp::List nlopt_optimize_vestep_diagonal(const List&, const List&, const mat&, const mat&, const List&)': optim_diag_cov.cpp:167:21: warning: variable 'result' set but not used [-Wunused-but-set-variable] OptimizerResult result = minimize_objective_on_parameters(optimizer.get(), objective_and_grad, parameters); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_fixed_cov.cpp -o optim_fixed_cov.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_full_cov.cpp -o optim_full_cov.o optim_full_cov.cpp: In function 'Rcpp::List nlopt_optimize_vestep(const List&, const List&, const mat&, const mat&, const List&)': optim_full_cov.cpp:175:21: warning: variable 'result' set but not used [-Wunused-but-set-variable] OptimizerResult result = minimize_objective_on_parameters(optimizer.get(), objective_and_grad, parameters); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_genet_cov.cpp -o optim_genet_cov.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_rank_cov.cpp -o optim_rank_cov.o optim_rank_cov.cpp: In function 'Rcpp::List nlopt_optimize_vestep_rank(const List&, const List&, const mat&, const mat&, const List&)': optim_rank_cov.cpp:165:21: warning: variable 'result' set but not used [-Wunused-but-set-variable] OptimizerResult result = minimize_objective_on_parameters(optimizer.get(), objective_and_grad, parameters); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c optim_spherical.cpp -o optim_spherical.o optim_spherical.cpp: In function 'Rcpp::List nlopt_optimize_vestep_spherical(const List&, const List&, const mat&, const mat&, const List&)': optim_spherical.cpp:166:21: warning: variable 'result' set but not used [-Wunused-but-set-variable] OptimizerResult result = minimize_objective_on_parameters(optimizer.get(), objective_and_grad, parameters); ^~~~~~ d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include' -I'd:/RCompile/CRANpkg/lib/4.1/nloptr/include' -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c packing.cpp -o packing.o d:/Compiler/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o PLNmodels.dll tmp.def RcppExports.o nlopt_wrapper.o optim_diag_cov.o optim_fixed_cov.o optim_full_cov.o optim_genet_cov.o optim_rank_cov.o optim_spherical.o packing.o -LD:/RCompile/recent/R-4.1.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.1.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R-4.1.3/bin/x64 -lR make[1]: Leaving directory '/d/temp/RtmpKAU5Ev/R.INSTALLd3e05cf32ce9/PLNmodels/src-x64' make[1]: Entering directory '/d/temp/RtmpKAU5Ev/R.INSTALLd3e05cf32ce9/PLNmodels/src-x64' make[1]: Leaving directory '/d/temp/RtmpKAU5Ev/R.INSTALLd3e05cf32ce9/PLNmodels/src-x64' installing to d:/Rcompile/CRANpkg/lib/4.1/00LOCK-PLNmodels/00new/PLNmodels/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to 'sqrt' Note: wrong number of arguments to 'sqrt' ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location *** arch - i386 Error: package or namespace load failed for 'PLNmodels' in library.dynam(lib, package, package.lib): DLL 'torchpkg' not found: maybe not installed for this architecture? Error: loading failed Execution halted *** arch - x64 ERROR: loading failed for 'i386' * removing 'd:/Rcompile/CRANpkg/lib/4.1/PLNmodels' * restoring previous 'd:/Rcompile/CRANpkg/lib/4.1/PLNmodels'