* using log directory 'd:/Rcompile/CRANpkg/local/4.1/MAGEE.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'MAGEE/DESCRIPTION' ... OK
* this is package 'MAGEE' version '1.3.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'doMC'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MAGEE' can be installed ... ERROR
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.1/MAGEE.Rcheck/00install.out' for details.
* DONE
The installation logfile:
* installing *source* package 'MAGEE' ...
** package 'MAGEE' successfully unpacked and MD5 sums checked
** using staged installation
** libs

*** arch - i386
make[1]: Entering directory '/d/temp/Rtmp63v7Rb/R.INSTALLd1182ce257d0/MAGEE/src-i386'
d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"  -DARMA_64BIT_WORD   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fitglmm.cpp -o fitglmm.o
In file included from d:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include/armadillo:26,
                 from d:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from d:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include/RcppArmadillo.h:29,
                 from fitglmm.cpp:27:
d:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: #pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed
   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
                                                                                      ^
d:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: #pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead
     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
                                                                           ^
d:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: #pragma message: INFO: see the documentation for details
   #pragma message ("INFO: see the documentation for details")
                                                             ^
d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"  -DARMA_64BIT_WORD   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c fitmagee.cpp -o fitmagee.o
d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"  -DARMA_64BIT_WORD   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c read_bgen.cpp -o read_bgen.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/arm/cpu_features.c -o libdeflate/lib/arm/cpu_features.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/x86/cpu_features.c -o libdeflate/lib/x86/cpu_features.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/adler32.c -o libdeflate/lib/adler32.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/crc32.c -o libdeflate/lib/crc32.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/deflate_compress.c -o libdeflate/lib/deflate_compress.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/deflate_decompress.c -o libdeflate/lib/deflate_decompress.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/gzip_compress.c -o libdeflate/lib/gzip_compress.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/gzip_decompress.c -o libdeflate/lib/gzip_decompress.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/utils.c -o libdeflate/lib/utils.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/zlib_compress.c -o libdeflate/lib/zlib_compress.o
d:/Compiler/rtools40/mingw32/bin/gcc  -I"D:/RCompile/recent/R-4.1.3/include" -DNDEBUG  -I'd:/RCompile/CRANpkg/lib/4.1/Rcpp/include' -I'd:/RCompile/CRANpkg/lib/4.1/RcppArmadillo/include'   -I"d:/Compiler/gcc-4.9.3/local330/include"     -pedantic -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c libdeflate/lib/zlib_decompress.c -o libdeflate/lib/zlib_decompress.o
d:/Compiler/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MAGEE.dll tmp.def fitglmm.o fitmagee.o read_bgen.o registerDynamicSymbol.o -LD:/RCompile/recent/R-4.1.3/bin/i386 -lRlapack -LD:/RCompile/recent/R-4.1.3/bin/i386 -lRblas -lgfortran -lm -lquadmath -lz -lbz2 -lzstd libdeflate/lib/arm/cpu_features.o libdeflate/lib/x86/cpu_features.o libdeflate/lib/adler32.o libdeflate/lib/crc32.o libdeflate/lib/deflate_compress.o libdeflate/lib/deflate_decompress.o libdeflate/lib/gzip_compress.o libdeflate/lib/gzip_decompress.o libdeflate/lib/utils.o libdeflate/lib/zlib_compress.o libdeflate/lib/zlib_decompress.o -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R-4.1.3/bin/i386 -lR
D:/Compiler/rtools40/mingw32/bin/../lib/gcc/i686-w64-mingw32/8.3.0/../../../../i686-w64-mingw32/bin/ld.exe: cannot find -lzstd
collect2.exe: error: ld returned 1 exit status
make[1]: Leaving directory '/d/temp/Rtmp63v7Rb/R.INSTALLd1182ce257d0/MAGEE/src-i386'
make[1]: Entering directory '/d/temp/Rtmp63v7Rb/R.INSTALLd1182ce257d0/MAGEE/src-i386'
make[1]: Leaving directory '/d/temp/Rtmp63v7Rb/R.INSTALLd1182ce257d0/MAGEE/src-i386'
no DLL was created
ERROR: compilation failed for package 'MAGEE'
* removing 'd:/Rcompile/CRANpkg/lib/4.1/MAGEE'
* restoring previous 'd:/Rcompile/CRANpkg/lib/4.1/MAGEE'