* using log directory 'd:/Rcompile/CRANpkg/local/4.1/GPCERF.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'GPCERF/DESCRIPTION' ... OK * this is package 'GPCERF' version '0.2.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GPCERF' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [6s] OK ** running examples for arch 'x64' ... [6s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [318s] ERROR Running 'testthat.R' [318s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(GPCERF) > > test_check("GPCERF") 2023-04-20 20:03:12 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... Loading required package: nnls 2023-04-20 20:03:25 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:03:39 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:04:00 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:04:14 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:04:27 CRANWIN 112204 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=56336 on localhost:11625 at 20:04:27.371 2023-04-20 20:04:31 CRANWIN 112204 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.98 s. 2023-04-20 20:04:31 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:04:44 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:04:57 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... [1] train-rmse:8.182872 [2] train-rmse:6.426709 [3] train-rmse:5.238456 [4] train-rmse:4.417770 [5] train-rmse:3.714199 [6] train-rmse:3.199701 [7] train-rmse:2.772024 [8] train-rmse:2.431168 [9] train-rmse:2.193286 [10] train-rmse:2.022729 [11] train-rmse:1.872023 [12] train-rmse:1.722789 [13] train-rmse:1.519293 [14] train-rmse:1.434294 [15] train-rmse:1.353402 [16] train-rmse:1.253249 [17] train-rmse:1.206950 [18] train-rmse:1.163431 [19] train-rmse:1.050253 [20] train-rmse:1.023109 [21] train-rmse:0.952899 [22] train-rmse:0.870721 [23] train-rmse:0.812226 [24] train-rmse:0.708909 [25] train-rmse:0.653647 [26] train-rmse:0.601754 [27] train-rmse:0.564925 [28] train-rmse:0.524051 [29] train-rmse:0.472632 [30] train-rmse:0.457999 [31] train-rmse:0.424110 [32] train-rmse:0.401561 [33] train-rmse:0.370844 [34] train-rmse:0.339035 [35] train-rmse:0.305074 [36] train-rmse:0.280104 [37] train-rmse:0.263870 [38] train-rmse:0.251769 [39] train-rmse:0.242262 [40] train-rmse:0.238355 [41] train-rmse:0.226590 [42] train-rmse:0.215206 [43] train-rmse:0.205528 [44] train-rmse:0.183962 [45] train-rmse:0.167752 [46] train-rmse:0.151896 [47] train-rmse:0.143509 [48] train-rmse:0.130744 [49] train-rmse:0.122127 [50] train-rmse:0.109059 2023-04-20 20:05:10 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:05:24 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:05:33 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:05:43 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:05:43 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:05:56 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:05:56 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:05:56 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:05:56 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:05:56 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:05:56 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:05:56 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:05:56 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:06:10 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 starting worker pid=95104 on localhost:11625 at 20:06:10.694 starting worker pid=60388 on localhost:11625 at 20:06:10.757 2023-04-20 20:06:25 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:06:38 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:06:38 CRANWIN 112204 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2023-04-20 20:06:38 CRANWIN 112204 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=53716 on localhost:11625 at 20:06:38.652 2023-04-20 20:06:42 CRANWIN 112204 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.53 s.} ... 2023-04-20 20:06:42 CRANWIN 112204 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=49288 on localhost:11625 at 20:06:43.177 2023-04-20 20:06:46 CRANWIN 112204 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.09999999999999 s. 2023-04-20 20:06:46 CRANWIN 112204 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=73000 on localhost:11625 at 20:06:47.296 2023-04-20 20:06:52 CRANWIN 112204 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.17999999999998 s. 2023-04-20 20:06:52 CRANWIN 112204 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 13.83 s. 2023-04-20 20:06:52 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:06:52 CRANWIN 112204 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2023-04-20 20:06:52 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:06:52 CRANWIN 112204 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2023-04-20 20:06:52 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:06:52 CRANWIN 112204 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2023-04-20 20:06:52 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:07:03 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:07:03 CRANWIN 112204 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2023-04-20 20:07:03 CRANWIN 112204 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86, user: CRAN, R version 4.1.3 (2022-03-10), detected cores: 32 2023-04-20 20:07:03 CRANWIN 112204 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ... 2023-04-20 20:07:03 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:07:16 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:07:29 CRANWIN 112204 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=83828 on localhost:11625 at 20:07:29.924 2023-04-20 20:07:33 CRANWIN 112204 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.06 s. 2023-04-20 20:07:33 CRANWIN 112204 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ... starting worker pid=69304 on localhost:11625 at 20:07:33.998 2023-04-20 20:07:38 CRANWIN 112204 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.59999999999997 s. 2023-04-20 20:07:38 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:07:48 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:08:02 CRANWIN 112204 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ... starting worker pid=81576 on localhost:11625 at 20:08:02.487 2023-04-20 20:08:06 CRANWIN 112204 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.00999999999999 s. 2023-04-20 20:08:06 CRANWIN 112204 GPCERF estimate_gps INFO: Started estimating GPS values ... 2023-04-20 20:08:20 CRANWIN 112204 GPCERF find_optimal_nn INFO: Started finding optimal values ... starting worker pid=9860 on localhost:11625 at 20:08:20.442 2023-04-20 20:08:25 CRANWIN 112204 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.31 s.} ... [ FAIL 0 | WARN 0 | SKIP 0 | PASS 107 ] > > proc.time() user system elapsed 244.42 23.55 317.74 ** running tests for arch 'x64' ... [276s] OK Running 'testthat.R' [275s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [237s] OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR