* using log directory 'd:/Rcompile/CRANpkg/local/4.0/stars.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'stars/DESCRIPTION' ... OK * this is package 'stars' version '0.5-5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'starsdata' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'stars' can be installed ... OK * checking installed package size ... NOTE installed size is 8.7Mb sub-directories of 1Mb or more: doc 2.3Mb nc 4.5Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [30s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [66s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [218s] OK Running 'aggregate.R' [6s] Comparing 'aggregate.Rout' to 'aggregate.Rout.save' ...4c4 < Linking to GEOS 3.9.1, GDAL 3.2.1, PROJ 7.2.1; sf_use_s2() is TRUE --- > Linking to GEOS 3.9.0, GDAL 3.2.1, PROJ 7.2.1 57c57 < file18d8c77bb359a.tif 33 199.25 365.5 365.5 531.75 698 --- > file46ef83309cd.tif 33 199.25 365.5 365.5 531.75 698 Running 'area.R' [3s] Comparing 'area.Rout' to 'area.Rout.save' ...51a52,64 > /PRODUCT/longitude, > /PRODUCT/latitude, > /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column, > stars object with 2 dimensions and 1 attribute > attribute(s): > Min. 1st Qu. Median Mean 3rd Qu. Max. > area [m^2] 25983110 28008871 35690854 42912281 54562137 100943458 > dimension(s): > from to offset delta refsys point values x/y > x 1 450 NA NA WGS 84 NA [450x278] -5.81066 [°],...,30.9468 [°] [x] > y 1 278 NA NA WGS 84 NA [450x278] 28.3605 [°],...,51.4686 [°] [y] > curvilinear grid > There were 15 warnings (use warnings() to see them) Running 'crop.R' [8s] Comparing 'crop.Rout' to 'crop.Rout.save' ... OK Running 'curvilinear.R' [3s] Comparing 'curvilinear.Rout' to 'curvilinear.Rout.save' ...54a55,88 > /PRODUCT/longitude, > /PRODUCT/latitude, > /PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column, > stars object with 3 dimensions and 1 attribute > attribute(s): > Min. 1st Qu. Median > nitrogendioxide_summed_total_c... 3.650813e-05 7.451281e-05 8.296968e-05 > Mean 3rd Qu. Max. NA's > nitrogendioxide_summed_total_c... 8.581399e-05 9.397442e-05 0.0004535302 330 > dimension(s): > from to offset delta refsys point values > x 1 450 NA NA WGS 84 NA [450x278] -5.81066 [°],...,30.9468 [°] > y 1 278 NA NA WGS 84 NA [450x278] 28.3605 [°],...,51.4686 [°] > time 1 1 NA NA NA NA NULL > x/y > x [x] > y [y] > time > curvilinear grid > stars object with 3 dimensions and 1 attribute > attribute(s): > Min. 1st Qu. Median > nitrogendioxide_summed_total_c... 4.383528e-05 7.480038e-05 8.344652e-05 > Mean 3rd Qu. Max. NA's > nitrogendioxide_summed_total_c... 8.607374e-05 9.398567e-05 0.000192237 32 > dimension(s): > from to offset delta refsys point values x/y > x 1 50 NA NA WGS 84 NA [50x31] -5.81066 [°],...,30.1405 [°] [x] > y 1 31 NA NA WGS 84 NA [50x31] 28.7828 [°],...,51.4686 [°] [y] > time 1 1 NA NA NA NA NULL > curvilinear grid > null device > 1 > There were 15 warnings (use warnings() to see them) Running 'datasets.R' [3s] Comparing 'datasets.Rout' to 'datasets.Rout.save' ...30,32c30,38 < Warning message: < In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : < there is no package called 'starsdata' --- > stars_proxy object with 1 attribute in 1 file(s): > $`MTD_MSIL1C.xml:10m:EPSG_32632` > [1] "[...]/MTD_MSIL1C.xml:10m:EPSG_32632" > > dimension(s): > from to offset delta refsys point values x/y > x 1 10980 3e+05 10 WGS 84 / UTM zone 32N NA NULL [x] > y 1 10980 6e+06 -10 WGS 84 / UTM zone 32N NA NULL [y] > band 1 4 NA NA NA NA B4,...,B8 Running 'dimensions.R' [5s] Comparing 'dimensions.Rout' to 'dimensions.Rout.save' ...7,19d6 < Warning messages: < 1: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 2: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 3: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 4: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 5: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 6: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". Running 'extract.R' [3s] Comparing 'extract.Rout' to 'extract.Rout.save' ... OK Running 'gridtypes.R' [3s] Comparing 'gridtypes.Rout' to 'gridtypes.Rout.save' ... OK Running 'nc.R' [4s] Comparing 'nc.Rout' to 'nc.Rout.save' ... OK Running 'plot.R' [5s] Comparing 'plot.Rout' to 'plot.Rout.save' ... OK Running 'predict.R' [10s] Comparing 'predict.Rout' to 'predict.Rout.save' ... OK Running 'proxy.R' [15s] Comparing 'proxy.Rout' to 'proxy.Rout.save' ...266a267,345 > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > stars_proxy object with 2 attributes in 18 file(s): > $sst > [1] "[...]/avhrr-only-v2.19810901.nc:sst" "[...]/avhrr-only-v2.19810902.nc:sst" > [3] "[...]/avhrr-only-v2.19810903.nc:sst" "[...]/avhrr-only-v2.19810904.nc:sst" > [5] "[...]/avhrr-only-v2.19810905.nc:sst" "[...]/avhrr-only-v2.19810906.nc:sst" > [7] "[...]/avhrr-only-v2.19810907.nc:sst" "[...]/avhrr-only-v2.19810908.nc:sst" > [9] "[...]/avhrr-only-v2.19810909.nc:sst" > > $anom > [1] "[...]/avhrr-only-v2.19810901.nc:anom" > [2] "[...]/avhrr-only-v2.19810902.nc:anom" > [3] "[...]/avhrr-only-v2.19810903.nc:anom" > [4] "[...]/avhrr-only-v2.19810904.nc:anom" > [5] "[...]/avhrr-only-v2.19810905.nc:anom" > [6] "[...]/avhrr-only-v2.19810906.nc:anom" > [7] "[...]/avhrr-only-v2.19810907.nc:anom" > [8] "[...]/avhrr-only-v2.19810908.nc:anom" > [9] "[...]/avhrr-only-v2.19810909.nc:anom" > > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 9 1981-09-01 UTC 1 days POSIXct NA NULL > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > stars object with 4 dimensions and 2 attributes > attribute(s), summary of first 1e+05 cells: > Min. 1st Qu. Median Mean 3rd Qu. Max. NA's > sst [C*°] -1.80 -1.19 -1.05 -0.3201670 -0.20 9.36 13360 > anom [C*°] -4.69 -0.06 0.52 0.2299385 0.71 3.70 13360 > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 9 1981-09-01 UTC 1 days POSIXct NA NULL > stars object with 5 dimensions and 1 attribute > attribute(s), summary of first 1e+05 cells: > Min. 1st Qu. Median Mean 3rd Qu. Max. NA's > sst.anom -1.8 -1.19 -1.05 -0.320167 -0.2 9.36 13360 > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 9 1981-09-01 UTC 1 days POSIXct NA NULL > new_dim 1 2 NA NA NA NA sst , anom > Error in c.stars_proxy(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + : > for proxy objects, along argument as list is not implemented > stars_proxy object with 1 attribute in 2 file(s): > $sst.anom > [1] "[...]/avhrr-only-v2.19810901.nc:sst" > [2] "[...]/avhrr-only-v2.19810901.nc:anom" > > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 1 1981-09-01 UTC NA POSIXct NA NULL > times 1 2 1981-09-01 1 days Date NA NULL Running 'raster.R' [21s] Comparing 'raster.Rout' to 'raster.Rout.save' ...121c121 < values 1 54 69 68.91242 86 255 --- > band1 1 54 69 68.91242 86 255 139c139 < values 47 67 78 79.14772 89 255 --- > lyr.1 47 67 78 79.14772 89 255 163c163 < names : L7_ETMs_1, L7_ETMs_2, L7_ETMs_3, L7_ETMs_4, L7_ETMs_5, L7_ETMs_6 --- > names : L7__1, L7__2, L7__3, L7__4, L7__5, L7__6 Running 'rasterize.R' [3s] Comparing 'rasterize.Rout' to 'rasterize.Rout.save' ... OK Running 'rectilinear.R' [4s] Comparing 'rectilinear.Rout' to 'rectilinear.Rout.save' ... OK Running 'redimension.R' [5s] Comparing 'redimension.Rout' to 'redimension.Rout.save' ... OK Running 'sf.R' [5s] Comparing 'sf.Rout' to 'sf.Rout.save' ... OK Running 'sp.R' [4s] Comparing 'sp.Rout' to 'sp.Rout.save' ... OK Running 'spacetime.R' [5s] Comparing 'spacetime.Rout' to 'spacetime.Rout.save' ... OK Running 'spatstat.R' [6s] Comparing 'spatstat.Rout' to 'spatstat.Rout.save' ... OK Running 'stars.R' [20s] Comparing 'stars.Rout' to 'stars.Rout.save' ...212c212 < 4 1841005 1143985 --- > 4 1841004 1143985 216c216 < 8 1841011 1143965 --- > 8 1841010 1143965 233,237d232 < Warning messages: < 1: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 2: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". 305,325d299 < Warning messages: < 1: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 2: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 3: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 4: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 5: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 6: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 7: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 8: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 9: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". < 10: In CPL_read_gdal(as.character(x), as.character(options), as.character(driver), : < GDAL Message 1: Recode from UTF-8 to CP_ACP failed with the error: "Invalid argument". 330,332c304,306 < sst [°C] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 < anom [°C] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 < err [°C] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 --- > sst [°C] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 > anom [°C] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 > err [°C] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 473a448,477 > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > sst, anom, > stars object with 4 dimensions and 2 attributes > attribute(s), summary of first 1e+05 cells: > Min. 1st Qu. Median Mean 3rd Qu. Max. NA's > sst [C*°] -1.80 -1.19 -1.05 -0.3201670 -0.20 9.36 13360 > anom [C*°] -4.69 -0.06 0.52 0.2299385 0.71 3.70 13360 > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > zlev 1 1 0 [m] NA NA NA NULL > time 1 9 1981-09-01 UTC 1 days POSIXct NA NULL > stars object with 3 dimensions and 2 attributes > attribute(s), summary of first 1e+05 cells: > Min. 1st Qu. Median Mean 3rd Qu. Max. NA's > sst [C*°] -1.80 -1.19 -1.05 -0.3201670 -0.20 9.36 13360 > anom [C*°] -4.69 -0.06 0.52 0.2299385 0.71 3.70 13360 > dimension(s): > from to offset delta refsys point values x/y > x 1 1440 0 0.25 NA NA NULL [x] > y 1 720 90 -0.25 NA NA NULL [y] > times 1 3 1981-09-01 1 days Date NA NULL Running 'subset.R' [5s] Comparing 'subset.Rout' to 'subset.Rout.save' ... OK Running 'testthat.R' [43s] Comparing 'testthat.Rout' to 'testthat.Rout.save' ...9,11d8 < [ FAIL 0 | WARN 10 | SKIP 0 | PASS 100 ] < < [ FAIL 0 | WARN 10 | SKIP 0 | PASS 100 ] Running 'tidy.R' [15s] Comparing 'tidy.Rout' to 'tidy.Rout.save' ... OK Running 'transform.R' [4s] Comparing 'transform.Rout' to 'transform.Rout.save' ... OK Running 'warp.R' [3s] Comparing 'warp.Rout' to 'warp.Rout.save' ... OK Running 'write.R' [4s] Comparing 'write.Rout' to 'write.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [77s] OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs