* using log directory 'd:/Rcompile/CRANpkg/local/4.0/pedtools.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'pedtools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pedtools' version '1.1.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pedtools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
Warning: parse error in file 'lines':
9: unexpected '>'
505: # Alternative syntax, adding one marker at a time
506: x2 = x |>
             ^
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [6s] ERROR
Running examples in 'pedtools-Ex.R' failed
The error most likely occurred in:

> ### Name: marker_attach
> ### Title: Attach markers to pedigrees
> ### Aliases: marker_attach setMarkers addMarkers
> 
> ### ** Examples
> 
> x = singleton(1)
> m1 = marker(x, `1` = "1/2")
> m2 = marker(x, `1` = "a/b")
> 
> # Attach to x
> x1 = setMarkers(x, list(m1, m2))
> 
> # Reversing the order of the markers
> setMarkers(x, list(m2, m1))
 id fid mid sex <1> <2>
  1   *   *   1 a/b 1/2
> 
> # Alternative syntax, adding one marker at a time
> x2 = x |> addMarker(`1` = "1/2") |> addMarker(`1` = "a/b")
Error: unexpected '>' in "x2 = x |>"
Execution halted
* checking for unstated dependencies in 'tests' ... WARNING
Warning: parse error in file 'testthat/test-marker-attach.R':
49:53: unexpected '>'
48: test_that("addMarkers() gives same result with and without alleleMarkers", {
49:   x = nuclearPed(fa="fa", mo="mo", children="boy") |>
                                                        ^
* checking tests ... [5s] ERROR
  Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(pedtools)
  > 
  > test_check("pedtools")
  Error in parse(con, n = -1, srcfile = srcfile, encoding = "UTF-8") : 
    test-marker-attach.R:49:53: unexpected '>'
  48: test_that("addMarkers() gives same result with and without alleleMarkers", {
  49:   x = nuclearPed(fa="fa", mo="mo", children="boy") |>
                                                          ^
  Calls: test_check ... doTryCatch -> lapply -> FUN -> source_file -> parse
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [6s] OK
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 2 WARNINGs