* using log directory 'd:/Rcompile/CRANpkg/local/4.0/mcmc.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'mcmc/DESCRIPTION' ... OK * this is package 'mcmc' version '0.9-7' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'mcmc' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking include directives in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [5s] OK ** running examples for arch 'x64' ... [6s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [38s] OK Running 'accept-batch.R' [0s] Comparing 'accept-batch.Rout' to 'accept-batch.Rout.save' ... OK Running 'circle.R' [1s] Comparing 'circle.Rout' to 'circle.Rout.save' ... OK Running 'initseq.R' [2s] Comparing 'initseq.Rout' to 'initseq.Rout.save' ... OK Running 'isotropic.R' [0s] Comparing 'isotropic.Rout' to 'isotropic.Rout.save' ... OK Running 'logit.R' [1s] Comparing 'logit.Rout' to 'logit.Rout.save' ... OK Running 'logitbat.R' [1s] Comparing 'logitbat.Rout' to 'logitbat.Rout.save' ... OK Running 'logitfun.R' [1s] Comparing 'logitfun.Rout' to 'logitfun.Rout.save' ... OK Running 'logitfunarg.R' [1s] Comparing 'logitfunarg.Rout' to 'logitfunarg.Rout.save' ... OK Running 'logitidx.R' [1s] Comparing 'logitidx.Rout' to 'logitidx.Rout.save' ... OK Running 'logitlogidx.R' [1s] Comparing 'logitlogidx.Rout' to 'logitlogidx.Rout.save' ... OK Running 'logitmat.R' [1s] Comparing 'logitmat.Rout' to 'logitmat.Rout.save' ... OK Running 'logitnegidx.R' [1s] Comparing 'logitnegidx.Rout' to 'logitnegidx.Rout.save' ... OK Running 'logitsub.R' [1s] Comparing 'logitsub.Rout' to 'logitsub.Rout.save' ... OK Running 'logitsubbat.R' [1s] Comparing 'logitsubbat.Rout' to 'logitsubbat.Rout.save' ... OK Running 'logitvec.R' [1s] Comparing 'logitvec.Rout' to 'logitvec.Rout.save' ... OK Running 'morph.R' [1s] Comparing 'morph.Rout' to 'morph.Rout.save' ... OK Running 'morph.metrop.R' [1s] Comparing 'morph.metrop.Rout' to 'morph.metrop.Rout.save' ... OK Running 'morphtoo.R' [2s] Comparing 'morphtoo.Rout' to 'morphtoo.Rout.save' ... OK Running 'saveseed.R' [1s] Comparing 'saveseed.Rout' to 'saveseed.Rout.save' ... OK Running 'saveseedmorph.R' [1s] Comparing 'saveseedmorph.Rout' to 'saveseedmorph.Rout.save' ... OK Running 'temp-par-witch.R' [5s] Running 'temp-par.R' [3s] Comparing 'temp-par.Rout' to 'temp-par.Rout.save' ... OK Running 'temp-ser-witch.R' [6s] Comparing 'temp-ser-witch.Rout' to 'temp-ser-witch.Rout.save' ... OK Running 'temp-ser.R' [5s] Comparing 'temp-ser.Rout' to 'temp-ser.Rout.save' ... OK ** running tests for arch 'x64' ... [42s] OK Running 'accept-batch.R' [1s] Comparing 'accept-batch.Rout' to 'accept-batch.Rout.save' ... OK Running 'circle.R' [1s] Comparing 'circle.Rout' to 'circle.Rout.save' ... OK Running 'initseq.R' [2s] Comparing 'initseq.Rout' to 'initseq.Rout.save' ... OK Running 'isotropic.R' [0s] Comparing 'isotropic.Rout' to 'isotropic.Rout.save' ... OK Running 'logit.R' [1s] Comparing 'logit.Rout' to 'logit.Rout.save' ... OK Running 'logitbat.R' [1s] Comparing 'logitbat.Rout' to 'logitbat.Rout.save' ... OK Running 'logitfun.R' [1s] Comparing 'logitfun.Rout' to 'logitfun.Rout.save' ... OK Running 'logitfunarg.R' [1s] Comparing 'logitfunarg.Rout' to 'logitfunarg.Rout.save' ... OK Running 'logitidx.R' [1s] Comparing 'logitidx.Rout' to 'logitidx.Rout.save' ... OK Running 'logitlogidx.R' [1s] Comparing 'logitlogidx.Rout' to 'logitlogidx.Rout.save' ... OK Running 'logitmat.R' [1s] Comparing 'logitmat.Rout' to 'logitmat.Rout.save' ... OK Running 'logitnegidx.R' [1s] Comparing 'logitnegidx.Rout' to 'logitnegidx.Rout.save' ... OK Running 'logitsub.R' [1s] Comparing 'logitsub.Rout' to 'logitsub.Rout.save' ... OK Running 'logitsubbat.R' [1s] Comparing 'logitsubbat.Rout' to 'logitsubbat.Rout.save' ... OK Running 'logitvec.R' [1s] Comparing 'logitvec.Rout' to 'logitvec.Rout.save' ... OK Running 'morph.R' [1s] Comparing 'morph.Rout' to 'morph.Rout.save' ... OK Running 'morph.metrop.R' [1s] Comparing 'morph.metrop.Rout' to 'morph.metrop.Rout.save' ... OK Running 'morphtoo.R' [3s] Comparing 'morphtoo.Rout' to 'morphtoo.Rout.save' ... OK Running 'saveseed.R' [1s] Comparing 'saveseed.Rout' to 'saveseed.Rout.save' ... OK Running 'saveseedmorph.R' [1s] Comparing 'saveseedmorph.Rout' to 'saveseedmorph.Rout.save' ... OK Running 'temp-par-witch.R' [6s] Running 'temp-par.R' [4s] Comparing 'temp-par.Rout' to 'temp-par.Rout.save' ... OK Running 'temp-ser-witch.R' [7s] Comparing 'temp-ser-witch.Rout' to 'temp-ser-witch.Rout.save' ... OK Running 'temp-ser.R' [5s] Comparing 'temp-ser.Rout' to 'temp-ser.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [129s] OK * checking PDF version of manual ... OK * DONE Status: OK