* using log directory 'd:/Rcompile/CRANpkg/local/4.0/cutpointr.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'cutpointr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cutpointr' version '1.1.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cutpointr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [34s] OK
** running examples for arch 'x64' ... [39s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ... [129s] OK
  Running 'testthat.R' [128s]
** running tests for arch 'x64' ... [144s] OK
  Running 'testthat.R' [144s]
* checking for unstated dependencies in vignettes ... NOTE
Warning: parse error in file 'd:/RCompile/CRANpkg/lib/4.0/cutpointr/doc/cutpointr.R':
/RCompile/CRANpkg/lib/4.0/cutpointr/doc/cutpointr.R:61:10: unexpected '>'
60:                      tol_metric = 0.05, break_ties = c)
61: opt_cut |>
             ^
Warning: parse error in file 'd:/RCompile/CRANpkg/lib/4.0/cutpointr/doc/cutpointr_bootstrapping.R':
/RCompile/CRANpkg/lib/4.0/cutpointr/doc/cutpointr_bootstrapping.R:49:20: unexpected '>'
48: summary(opt_cut)
49: opt_cut$boot[[1]] |>
                       ^
Warning: parse error in file 'd:/RCompile/CRANpkg/lib/4.0/cutpointr/doc/cutpointr_plotting.R':
/RCompile/CRANpkg/lib/4.0/cutpointr/doc/cutpointr_plotting.R:38:14: unexpected '>'
37: library(tidyr)
38: opt_cut_b_g |>
                 ^
Warning: parse error in file 'd:/RCompile/CRANpkg/lib/4.0/cutpointr/doc/cutpointr_roc.R':
/RCompile/CRANpkg/lib/4.0/cutpointr/doc/cutpointr_roc.R:26:14: unexpected '>'
25: library(tidyr)
26: opt_cut_b_g |>
                 ^
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [152s] WARNING
Error(s) in re-building vignettes:
--- re-building 'cutpointr.Rmd' using rmarkdown
Quitting from lines 238-245 (cutpointr.Rmd) 
Error: processing vignette 'cutpointr.Rmd' failed with diagnostics:
<text>:5:10: unexpected '>'
4:                      tol_metric = 0.05, break_ties = c)
5: opt_cut |>
            ^
--- failed re-building 'cutpointr.Rmd'

--- re-building 'cutpointr_benchmarks.Rmd' using rmarkdown
--- finished re-building 'cutpointr_benchmarks.Rmd'

--- re-building 'cutpointr_bootstrapping.Rmd' using rmarkdown
Quitting from lines 153-157 (cutpointr_bootstrapping.Rmd) 
Error: processing vignette 'cutpointr_bootstrapping.Rmd' failed with diagnostics:
<text>:3:20: unexpected '>'
2: summary(opt_cut)
3: opt_cut$boot[[1]] |>
                      ^
--- failed re-building 'cutpointr_bootstrapping.Rmd'

--- re-building 'cutpointr_estimation.Rmd' using rmarkdown
Assuming the positive class is yes
Assuming the positive class has higher x values
--- finished re-building 'cutpointr_estimation.Rmd'

--- re-building 'cutpointr_plotting.Rmd' using rmarkdown
Quitting from lines 101-109 (cutpointr_plotting.Rmd) 
Error: processing vignette 'cutpointr_plotting.Rmd' failed with diagnostics:
<text>:3:14: unexpected '>'
2: library(tidyr)
3: opt_cut_b_g |>
                ^
--- failed re-building 'cutpointr_plotting.Rmd'

--- re-building 'cutpointr_roc.Rmd' using rmarkdown
Quitting from lines 75-84 (cutpointr_roc.Rmd) 
Error: processing vignette 'cutpointr_roc.Rmd' failed with diagnostics:
<text>:3:14: unexpected '>'
2: library(tidyr)
3: opt_cut_b_g |>
                ^
--- failed re-building 'cutpointr_roc.Rmd'

--- re-building 'cutpointr_user_functions.Rmd' using rmarkdown
--- finished re-building 'cutpointr_user_functions.Rmd'

SUMMARY: processing the following files failed:
  'cutpointr.Rmd' 'cutpointr_bootstrapping.Rmd'
  'cutpointr_plotting.Rmd' 'cutpointr_roc.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE