* using log directory 'd:/Rcompile/CRANpkg/local/4.0/aster2.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'aster2/DESCRIPTION' ... OK * this is package 'aster2' version '0.3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'aster2' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [4s] OK ** running examples for arch 'x64' ... [5s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... [50s] OK Running 'asterdata.R' [2s] Comparing 'asterdata.Rout' to 'asterdata.Rout.save' ... OK Running 'constancy.R' [4s] Comparing 'constancy.Rout' to 'constancy.Rout.save' ... OK Running 'echinacea-cond.R' [3s] Comparing 'echinacea-cond.Rout' to 'echinacea-cond.Rout.save' ...66,69d65 < Registered S3 methods overwritten by 'aster2': < method from < as.character.astfam aster < print.astfam aster Running 'echinacea.R' [20s] Comparing 'echinacea.Rout' to 'echinacea.Rout.save' ...81,84d80 < Registered S3 methods overwritten by 'aster2': < method from < as.character.astfam aster < print.astfam aster Running 'fam-degen.R' [3s] Comparing 'fam-degen.Rout' to 'fam-degen.Rout.save' ... OK Running 'families.R' [4s] Comparing 'families.Rout' to 'families.Rout.save' ... OK Running 'logl.R' [2s] Comparing 'logl.Rout' to 'logl.Rout.save' ... OK Running 'subset.R' [2s] Comparing 'subset.Rout' to 'subset.Rout.save' ... OK Running 'transform.R' [3s] Comparing 'transform.Rout' to 'transform.Rout.save' ... OK Running 'valid.R' [3s] Comparing 'valid.Rout' to 'valid.Rout.save' ... OK Running 'zeros.R' [2s] Comparing 'zeros.Rout' to 'zeros.Rout.save' ... OK ** running tests for arch 'x64' ... [52s] OK Running 'asterdata.R' [3s] Comparing 'asterdata.Rout' to 'asterdata.Rout.save' ... OK Running 'constancy.R' [4s] Comparing 'constancy.Rout' to 'constancy.Rout.save' ... OK Running 'echinacea-cond.R' [3s] Comparing 'echinacea-cond.Rout' to 'echinacea-cond.Rout.save' ...66,69d65 < Registered S3 methods overwritten by 'aster2': < method from < as.character.astfam aster < print.astfam aster Running 'echinacea.R' [20s] Comparing 'echinacea.Rout' to 'echinacea.Rout.save' ...81,84d80 < Registered S3 methods overwritten by 'aster2': < method from < as.character.astfam aster < print.astfam aster Running 'fam-degen.R' [3s] Comparing 'fam-degen.Rout' to 'fam-degen.Rout.save' ... OK Running 'families.R' [4s] Comparing 'families.Rout' to 'families.Rout.save' ... OK Running 'logl.R' [3s] Comparing 'logl.Rout' to 'logl.Rout.save' ... OK Running 'subset.R' [3s] Comparing 'subset.Rout' to 'subset.Rout.save' ... OK Running 'transform.R' [3s] Comparing 'transform.Rout' to 'transform.Rout.save' ... OK Running 'valid.R' [3s] Comparing 'valid.Rout' to 'valid.Rout.save' ... OK Running 'zeros.R' [3s] Comparing 'zeros.Rout' to 'zeros.Rout.save' ... OK * checking PDF version of manual ... OK * DONE Status: OK