Interface Package for the 'EpiGraphDB' Platform

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Documentation for package ‘epigraphdb’ version 0.2.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

confounder	MR evidence on confounding traits between exposure and outcome
cypher	Send a query in Cypher to EpiGraphDB
drugs_risk_factors	Drugs for risk factors
genetic_cor	Genetic correlations between traits
literature_gwas	Literature evidence regarding a GWAS trait
mappings_gene_to_protein	Return protein uniprot_id from associated genes
meta_nodes_list	List meta nodes (e.g. Gwas, Gene, etc.)
meta_nodes_list_node	List nodes under a meta node
meta_nodes_search_node	Search a node by its id field, or its name field
meta_rels_list	List meta rels (e.g. MR, etc.)
meta_rels_list_rel	List relationships under a meta relationship
mr	Return information related to Mendelian Randomisation
obs_cor	Observational correlations between traits
ontology_gwas_efo	Ontology association between EFO term and Gwas
pathway	Pathway evidence
pqtl	Return information related to the pQTL analysis
pqtl_list	Return a list of all proteins/exposures or traits/outcomes available in the database
pqtl_pleio	Return information related to the pleiotropy of SNPs
protein_in_pathway	For the list of proteins, returns their associated pathway data
query_epigraphdb	Send data request to an EpiGraphDB API endpoint
xqtl_multi_snp_mr	Multi SNP QTL MR evidence
xqtl_single_snp_mr	Single SNP QTL MR evidence