Function to construct an object of class siamcat-class

siamcat(...)

Arguments

...

list of arguments needed in order to construct a SIAMCAT object

Value

A new siamcat-class object

Details

Build siamcat-class objects from their components.

Examples

# example with package data fn.in.feat <- system.file('extdata', 'feat_crc_study-pop-I_N141_tax_profile_mocat_bn_specI_clusters.tsv', package = 'SIAMCAT') fn.in.label <- system.file('extdata', 'label_crc_study-pop-I_N141_tax_profile_mocat_bn_specI_clusters.tsv', package = 'SIAMCAT') fn.in.meta <- system.file('extdata', 'num_metadata_crc_study-pop-I_N141_tax_profile_mocat_bn_specI_clusters.tsv', package = 'SIAMCAT') feat <- read.features(fn.in.feat)
#> The provided feature names were not semantically correct for #> use in R, they were updated.
label <- read.labels(fn.in.label) meta <- read.meta(fn.in.meta) siamcat <- siamcat(feat, label, meta)